Biological method for the production of adipic acid and intermediates

ABSTRACT

A gene cluster has been isolated from an Acinetobacter sp. that encodes the enzymes expected to convert cyclohexanol to adipic acid. The entire gene cluster has been cloned and all open reading frames have been sequenced. Cosmid clones have been identified containing the gene cluster. Demonstration of conversion of cyclohexanol to adipic acid has been made with the recombinant E. coli host strain containing the cosmids.

This is a Continuation-in-Part application, filed under 37 C.F.R. 1.153 (b) and claiming priority to U.S. Ser. No. 09/252,553, filed Feb. 19, 1999 now abandoned.

FIELD OF THE INVENTION

The invention relates to the field of molecular biology and microbiology. More specifically adipic acid has been produced from cyclohexanol by micro-biological means. The reaction is mediated by a set of enzymes resident on a 17 kb gene cluster, isolated from Acinetobacter sp.

BACKGROUND OF THE INVENTION

Production of adipic acid in the U.S. was 1.96 billion pounds in 1997 with an estimated 2.0 billion pounds in 1998. Historically the demand for adipic acid has grown 2% per year and 1.5-2% is expected through the year 2002. Adipic acid consistently ranks as one of the top fifty chemicals produced domestically. Nearly 90% of domestic adipic acid is used to produce nylon-6,6. Other uses of adipic acid include production of lubricants and plasticizers, and as a food acidulant.

The dominant industrial process for synthesizing adipic acid employs initial air oxidation of cyclohexane to yield a mixture of cyclohexanone (ketone) and cyclohexanol (alcohol), which is designated KA (see for example U.S. Pat. No. 5,221,800). Hydrogenation of phenol to yield KA is also used commercially, although this process accounts for just 2% of all adipic acid production. KA produced via both methods is oxidized with nitric acid to produce adipic acid. Reduced nitrogen oxides including NO₂, NO, and N₂O are produced as by-products and are recycled back to nitric acid at varying levels.

Research has also focused on synthesis of adipic acid from alternative feedstocks. Significant attention has been directed at carbonylation of butadiene (U.S. Pat. No. 5,166,421). More recently, a method of dimerizing methyl acrylates was reported, opening up the possibility of adipic acid synthesis from C-3 feedstocks.

These processes are not entirely desirable due to their heavy reliance upon environmentally sensitive feedstocks, and their propensity to yield undesirable by-products. Non-synthetic, biological routes to adipic acid would be more advantageous to industry and beneficial to the environment.

A number of microbiological routes are known. Wildtype and mutant organisms have been shown to convert renewable feedstocks such as glucose and other hydrocarbons to adipic acid [Frost, John, Chem. Eng. (Rugby, Engl.) (1996), 611, 32-35; WO 9507996; Steinbuechel, AlexanderCLB Chem. Labor Biotech. (1995), 46(6), 277-8; Draths et al., ACS Symp. Ser. (1994), 577(Benign by Design), 32-45, U.S. Pat. No. 4,400,468; JP 49043156 B4; and DE 2140133]. Similarly, organisms possessing nitrilase activity have been shown to convert nitriles to carboxylic acids including adipic acid [Petre et al., AU 669951; CA 2103616].

Additionally, wildtype organisms have been used to convert cyclohexane and cyclohexanol and other alcohols to adipic acid [JP 01023894 A2; Cho; Takeshi et al., Bio Ind, (1991), 8(10), 671-8; Horiguchi et al., JP 01023895 A2; JP 01023894 A2; JP 61128890 A; Hasegawa et al., Biosci., Biotechnol., Biochem. (1992), 56(8), 1319-20; Yoshizako et al., J. Ferment. Bioeng. (1989), 67(5), 335-8; Kim et al., Sanop Misaengmul Hakhoechi (1985), 13(1). 71-7; Donoghue et al., Eur. J. Biochem. (1975), 60(1), 1-7].

One enzymatic pathway for the conversion of cyclohexanol to adipic acid has been suggested as including the intermediates cyclohexanol, cyclohexanone, 2-hydroxycyclohexanone, ε-caprolactone, 6-hydroxycaproic acid, and adipic acid. Some specific enzyme activities in this pathway have been demonstrated, including cyclohexanol dehydrogenase, NADPH-linked cyclohexanone oxygenase, ε-caprolactone hydrolase, and NAD (NADP)-linked 6-hydroxycaproic acid dehydrogenase (Tanaka et al., Hakko Kogaku Kaishi (1977), 55(2), 62-7). An alternate enzymatic pathway has been postulated to comprise cyclohexanol→cyclohexanone→1-oxa-2-oxocycloheptane→6-hydroxyhexanoate→6-oxohexanoate→adipate [Donoghue et al., Eur. J. Biochem. (1975), 60(1), 1-7]. The literature is silent on the specific gene sequences encoding the cyclohexanol to adipic acid pathway, with the exception of the monoxygenase, responsible for the conversion of cyclohexanone to caprolactone, [Chen,et al., .J. Bacteriol., 170, 781-789 (1988)].

The problem to be solved, therefore is to provide a synthesis route for adipic acid which not only avoids reliance on environmentally sensitive starting materials but also makes efficient use of inexpensive, renewable resources. It would further be desirable to provide a synthesis route for adipic acid which avoids the need for significant energy inputs and which minimizes the formation of toxic by-products.

Applicants have solved the stated problem by identifying, isolating and cloning a 17 kb nucleic acid fragment from Acinetobacter sp. that is responsible for mediating the conversion of cyclohexanol to adipic acid. Recombinant E. coli hosts with the DNA containing the 17 kb gene cluster conveys on the host the ability to convert cyclohexanol to adipic acid.

SUMMARY OF THE INVENTION

The invention provides-an isolated nucleic acid fragment encoding an adipic acid synthesizing enzyme selected from the group consisting of: an isolated nucleic acid fragment encoding an adipic acid synthesizing enzyme selected from the group consisting of: (a) an isolated nucleic acid molecule encoding the amino acid sequence set forth in SEQ ID NO:12, SEQ ID NO:20, SEQ ID NO:24, and SEQ ID NO:26, or an enzymatically active fragment thereof; (b) an isolated nucleic acid molecule that hybridizes with (a) under the following hybridization conditions: 0.1×SSC, 0.1% SDS at 65° C.; and washed with 2×SSC, 0.1% SDS followed by 0.1×SSC. 0.1% SDS; (c) an isolated nucleic acid molecule that is completely complementary to (a) or (b).

In another embodiment the invention provides methods for the isolation of nucleic acid fragments substantially similar to those encoding the polypeptides as set forth in SEQ ID NO:12, SEQ ID NO:20, SEQ ID NO:24, and SEQ ID NO:26, based on the partial sequence of said nucleic acid fragments.

The invention further provides a method for the production of adipic acid comprising: contacting a transformed host cell under suitable growth conditions with an effective amount of cyclohexanol whereby adipic acid is produced, said transformed host cell comprising a nucleic acid fragment encoding SEQ ID NO:10, SEQ ID NO:12, SEQ ID NO:20, SEQ ID NO:24, and SEQ ID NO:26 under the control of suitable regulatory sequences.

The invention additionally provides methods for the production of intermediates in the pathway for the synthesis of adipic acid from cyclohexanol comprising transformed organisms transformed with any one of the open reading frames encoding SEQ ID NO:12, SEQ ID NO:20, SEQ ID NO:24, and SEQ ID NO:26.

Additionally, the invention provides host cells transformed with all or a substantial portion of the 17 kb gene cluster.

BRIEF DESCRIPTION OF THE DRAWINGS, SEQUENCE DESCRIPTIONS AND BIOLOGICAL DEPOSITS

FIG. 1 is a diagram showing the pathway for the conversion of cyclohexanol to adipic acid.

FIG. 2 is a diagram showing the organization of ORF's 1-13 on the 17 kb gene cluster.

FIG. 3 is a diagram showing the amount of adipic acid produced from the recombinant E. coli cosmid clones.

The invention can be more fully understood from the following detailed description and the accompanying sequence descriptions which form a part of this application.

The following sequence descriptions and sequences listings attached hereto comply with the rules governing nucleotide and/or amino acid sequence disclosures in patent applications as set forth in 37 C.F.R. § 1.821-1.825. The Sequence Descriptions contain the one letter code for nucleotide sequence characters and the three letter codes for amino acids as defined in conformity with the IUPAC-IYUB standards described in Nucleic Acids Research 13:3021-3030 (1985) and in the Biochemical Journal 219 (No. 2):345-373 (1984) which are herein incorporated by reference. The symbols and format used for nucleotide and amino acid sequence data comply with the rules set forth in 37 C.F.R. § 1.822.

SEQ ID NO:1 is the nucleotide sequence of ORF 1 encoding a hydroxyacyl CoA dehydrogenase enzyme isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:2 is the deduced amino acid sequence of ORF 1 encoding a hydroxyacyl CoA dehydrogenase enzyme isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:3 is the nucleotide sequence of ORF 2 encoding an enoyl CoA hydratase enzyme isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:4 is the deduced amino acid sequence of ORF 2 encoding an enoyl CoA hydratase enzyme isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:5 is the nucleotide sequence of ORF 3 encoding a short chain acyl-CoA dehydrogenase enzyme isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:6 is the deduced amino acid sequence of ORF 3 encoding a short chain acyl-CoA dehydrogenase enzyme isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:7 is the nucleotide sequence of ORF 4 encoding a ubiquinone oxidoreductase enzyme isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:8 is the deduced amino acid sequence of ORF 4 encoding a ubiquinone oxidoreductase enzyme isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:9 is the nucleotide sequence of ORF 5 encoding a monooxygenase enzyme isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:10 is the deduced amino acid sequence of ORF 5 encoding a monooxygenase enzyme isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:11 is the nucleotide sequence of ORF 6 encoding an aldehyde dehydrogenase enzyme isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:12 is the deduced amino acid sequence of ORF 6 encoding an aldehyde dehydrogenase enzyme isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:13 is the nucleotide sequence of ORF 7 encoding a AraC-like transcriptional regulator protein isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:14 is the deduced amino acid sequence of ORF 7 encoding a AraC-like transcriptional regulator protein isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:15 is the nucleotide sequence of ORF 8 having an unknown function isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:16 is the deduced amino acid sequence of ORF 8 having an unknown function isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:17 is the nucleotide sequence of ORF 9 encoding a recombinase enzyme isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:18 is the deduced amino acid sequence of ORF 9 encoding a recombinase enzyme isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:19 is the nucleotide sequence of ORF 10 encoding a dehydrogenase enzyme isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:20 is the deduced amino acid sequence of ORF 10 encoding a dehydrogenase enzyme isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:21 is the nucleotide sequence of ORF 11 encoding a protein of unknown finction isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:22 is the deduced amino acid sequence of ORF 11 encoding a protein of unknown function isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:23 is the nucleotide sequence of ORF 12 encoding a NAD-dependent alcohol dehydrogenase enzyme isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:24 is the deduced amino acid sequence of ORF 12 encoding a NAD-dependent alcohol dehydrogenase enzyme isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:25 is the nucleotide sequence of ORF 13 encoding a hydolase enzyme isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:26 is the deduced amino acid sequence of ORF 13 encoding a hydolase enzyme isolated from a 17 kb nucleic acid fragment from Acinetobacter sp.

SEQ ID NO:27 is the nucleotide sequence of the 17 kb gene cluster isolated from a Acinetobacter sp., encoding all the enzymes relevant to the biocoversion of cyclohexanol to adipic acid.

SEQ ID NO:28-31 are primers used for the 16s rRNA identification of the source of the 17 kb gene cluster as an Acinetobacter sp.

SEQ ID NO:31 is the sequence of a primer used for screening the cosmid library of our isolated Acinetobcter sp. based on homology to the published sequence from Acinetbbcter NCIB 9871.

SEQID NO:32 is the sequence of a primer used to sequence 16s rDNA for typing the isolated bacterium.

DETAILED DESCRIPTION OF THE INVENTION

The present invention provides new sequences encoding key enzymes in the synthesis of adipic acid from cyclohexanol. The genes and their expression products are useful for the creation of recombinant organisms that have the ability to produce adipic acid while growing on cyclohexanol, and for the identification of new species of bacteria having the ability to produce adipic acid. Full length sequence for 13 ORF's have been obtained and identified by comparison to public databases containing nucleotide and protein sequences using the BLAST algorithms well known to those skilled in the art. The relevant ORF's all reside on a 17 kb nucleic acid fragment and together represent a gene cluster that encodes proteins that are sufficient to mediate the transformation of cyclohexanol to adipic acid. Conversion of cyclohexanol to adipic acid has been observed with recombinant host cells containing the 17 kb nucleic acid fragment.

In this disclosure, a number of terms and abbreviations are used. The following definitions are provided.

“Open reading frame” is abbreviated ORF.

“Polymerase chain reaction” is abbreviated PCR.

“High performance liquid chromatography” is abbreviated HPLC.

“Mass spectrometry” is abbreviated MS.

“High performance liquid chromatography coupled with mass spectrometry” is abbreviated LC/MS.

“3-hydroxybutyryl CoA dehydrogenase” refers to an enzyme that directs the bacterial metabolic intermediate acetoacetyl-CoA toward butyrate or butanol. Within the context of the present invention this enzyme is encoded by ORF1 (designated as fadC) and is resident on the 17 kb Acinetobacter gene cluster, necessary for the conversion of cyclohexanol to adipic acid.

“Enoyl-CoA hydratase” refers to an enzyme that is involved in the degradation of straight-chain fatty acids. Within the context of the present invention this enzyme is encoded by ORF2 (designated asfadB) and is resident on the 17 kb Acinetobacter gene cluster, necessary for the conversion of cyclohexanol to adipic acid.

“Acyl-CoA dehydrogenase” refers to an enzyme that catalyzes the oxidation of straight-chain fatty acids. Within the context of the present invention this enzyme is encoded by ORF3 (designated asfade) and is resident on the 17 kb Acinetobacter gene cluster, necessary for the conversion of cyclohexanol to adipic acid.

“Ubiquinone oxidoreductase” refers to a redox enzyme that functions in proton-translocation of lipid bilayer membranes in prokaryotic and eukaryotic species. Within the context of the present invention this enzyme is encoded by ORF4 (designated as etfD) and is resident on the 17 kb Acinetobacter gene cluster, necessary for the conversion of cyclohexanol to adipic acid.

“Cyclohexanone monooxygenase” refers to an enzyme that catalyzes the conversion of cyclohexanone to ε-caprolactone. Within the context of the present invention this enzyme is encoded by ORF5 (designated as chdA) and is resident on the 17 kb Acinetobacter gene cluster, necessary for the conversion of cyclohexanol to adipic acid.

“6-aldehyde hexanoic acid dehydrogenase” refers to an enzyme that catalyzes the conversion of 6-aldehyde hexanoic acid to adipic acid. Within the context of the present invention this enzyme is encoded by ORF6 (designated as chdB) and is resident on the 17 kb Acinetobacter gene cluster, necessary for the conversion of cyclohexanol to adipic acid.

“Recombinase” will mean a protein that mediates site specific recombination of nucleic acid fragments. Within the context of the present invention this enzyme is encoded by ORF9 (designated as chdY, most closely related to pilin gene inverting protein) and is resident on the 17 kb Acinetobacter gene cluster, necessary for the conversion of cyclohexanol to adipic acid.

“Cyclohexanol dehydrogenase” refers to an enzyme that catalyzes the conversion of cyclohexanol to cyclohexanone. Within the context of the present invention this enzyme is encoded by ORF10 (designated as chdC) and is resident on the 17 kb Acinetobacter gene cluster, necessary for the conversion of cyclohexanol to adipic acid.

“6-hydroxy hexanoic acid dehydrogenase” refers to an enzyme that atalyzes the conversion of 6-hydroxy hexanoic acid to 6-aldehyde hexanoic acid. Within the context of the present invention this enzyme is encoded by ORF12 (designated as chdD) and is resident on the 17 kb Acinetobacter gene cluster, necessary for the conversion of cyclohexanol to adipic acid.

“Caprolactone hydolase” refers to an enzyme that catalyzes the conversion of caprolactone to 6-alcohol hexanoic acid. Within the context of the present invention this enzyme is encoded by ORF 13 (designated as chdE) and is resident on the 17 kb Acinetobacter gene cluster, necessary for the conversion of cyclohexanol to adipic acid.

The term “gene cluster” will mean genes organized in a single expression unit or physically associated with each other.

The term “17 kb nucleic acid fragment” refers to the 17 kb gene cluster comprising ORF's 1-13 necessary for the conversion of cyclohexanol to adipic acid.

As used herein, an “isolated nucleic acid fragment” is a polymer of RNA or DNA that is single- or double-stranded, optionally containing synthetic, non-natural or altered nucleotide bases. An isolated nucleic acid fragment in the form of a polymer of DNA may be comprised of one or more segments of cDNA, genomic DNA or synthetic DNA.

The term “adipic acid synthesizing enzyme” means the gene product of any of ORF 5, ORF 6, ORF 10, ORF 12 and ORF 13 SEQ ID NO:9, SEQ ID NO:11, SEQ ID NO:19, SEQ ID NO:23 and SEQ ID NO:25 respectively.

As used herein, “substantially similar” refers to nucleic acid fragments wherein changes in one or more nucleotide bases results in substitution of one or more amino acids, but do not affect the functional properties of the protein encoded by the DNA sequence. “Substantially similar” also refers to nucleic acid fragments wherein changes in one or more nucleotide bases does not affect the ability of the nucleic acid fragment to mediate alteration of gene expression by antisense or co-suppression technology. “Substantially similar” also refers to modifications of the nucleic acid fragments of the instant invention such as deletion or insertion of one or more nucleotide bases that do not substantially affect the functional properties of the resulting transcript. It is therefore understood that the invention encompasses more than the specific exemplary sequences.

For example, it is well known in the art that alterations in a gene which result in the production of a chemically equivalent amino acid at a given site, but do not effect the functional properties of the encoded protein are common. Thus, a codon for the amino acid alanine, a hydrophobic amino acid, may be substituted by a codon encoding another less hydrophobic residue (such as glycine) or a more hydrophobic residue (such as valine, leucine, or isoleucine). Similarly, changes which result in substitution of one negatively charged residue for another (such as aspartic acid for glutamic acid) or one positively charged residue for another (such as lysine for arginine) can also be expected to produce a functionally equivalent product. Nucleotide changes which result in alteration of the N-terminal and C-terminal portions of the protein molecule would also not be expected to alter the activity of the protein. Each of the proposed modifications is well within the routine skill in the art, as is determination of retention of biological activity of the encoded products. Moreover, the skilled artisan recognizes that substantially similar sequences encompassed by this invention are also defined by their ability to hybridize, under stringent conditions (0.1×SSC, 0.1% SDS, 65° C. and washed with 2×SSC, 0.1% SDS followed by 0.1×SSC, 0.1% SDS), with the sequences exemplified herein. Preferred substantially similar nucleic acid fragments of the instant invention are those nucleic acid fragments whose DNA sequences are at least 80% identical to the DNA sequence of the nucleic acid fragments reported herein. More preferred nucleic acid fragments are at least 90% identical to the DNA sequence of the nucleic acid fragments reported herein. Most preferred are nucleic acid fragments that are at least 95% identical to the DNA sequence of the nucleic acid fragments reported herein.

A nucleic acid molecule is “hybridizable” to another nucleic acid molecule, such as a cDNA, genomic DNA, or RNA, when a single stranded form of the nucleic acid molecule can anneal to the other nucleic acid molecule under the appropriate conditions of temperature and solution ionic strength. Hybridization and washing conditions are well known and exemplified in Sambrook, J., Fritsch, E. F. and Maniatis, T. Molecular Cloning: A Laboratory Manual, Second Edition, Cold Spring Harbor Laboratory Press, Cold Spring Harbor (1989), particularly Chapter 11 and Table 11.1 therein (entirely incorporated herein by reference). The conditions of temperature and ionic strength determine the “stringency” of the hybridization. For preliminary screening for homologous nucleic acids, low stringency hybridization conditions, corresponding to a Tm of 55°, can be used, e.g., 5×SSC, 0.1% SDS, 0.25% milk, and no forrnarnide; or 30% formamide, 5×SSC, 0.5% SDS. Moderate stringency hybridization conditions correspond to a higher Tm, e.g., 40% formamide, with 5× or 6×SSC. Hybridization requires that the two nucleic acids contain complementary sequences, although depending on the stringency of the hybridization, mismatches between bases are possible. The appropriate stringency for hybridizing nucleic acids depends on the length of the nucleic acids and the degree of complementation, variables well known in the art. The greater the degree of similarity or homology between two nucleotide sequences, the greater the value of Tm for hybrids of nucleic acids having those sequences. The relative stability (corresponding to higher Tm) of nucleic acid hybridizations decreases in the following order: RNA:RNA, DNA:RNA, DNA:DNA. For hybrids of greater than 100 nucleotides in length, equations for calculating Tm have been derived (see Sambrook et al., supra, 9.50-9.51). For hybridizations with shorter nucleic acids, i.e., oligonucleotides, the position of mismatches becomes more important, and the length of the oligonucleotide determines its specificity (see Sambrook et al., supra, 11.7-11.8). In one embodiment the length for a hybridizable nucleic acid is at least about 10 nucleotides. Preferable a minimum length for a hybridizable nucleic acid is at least about 15 nucleotides; more preferably at least about 20 nucleotides; and most preferably the length is at least 30 nucleotides. Furthermore, the skilled artisan will recognize that the temperature and wash solution salt concentration may be adjusted as necessary according to factors such as length of the probe.

A “substantial portion” of an amino acid or nucleotide sequence comprising enough of the amino acid sequence of a polypeptide or the nucleotide sequence of a gene to putatively identify that polypeptide or gene, either by manual evaluation of the sequence by one skilled in the art, or by computer-automated sequence comparison and identification using algorithms such as BLAST (Basic Local Alignment Search Tool; Altschul, S. F., et al., (1993) J. Mol. Biol. 215:403-410; see also www.ncbi.nlm.nih.gov/BLAST/). In general, a sequence of ten or more contiguous amino acids or thirty or more nucleotides is necessary in order to putatively identify a polypeptide or nucleic acid sequence as homologous to a known protein or gene. Moreover, with respect to nucleotide sequences, gene specific oligonucleotide probes comprising 20-30 contiguous nucleotides may be used in sequence-dependent methods of gene identification (e.g., Southern hybridization) and isolation (e.g., in situ hybridization of bacterial colonies or bacteriophage plaques). In addition, short oligonucleotides of 12-15 bases may be used as amplification primers in PCR in order to obtain a particular nucleic acid fragment comprising the primers. Accordingly, a “substantial portion” of a nucleotide sequence comprises enough of the sequence to specifically identify and/or isolate a nucleic acid fragment comprising the sequence. The instant specification teaches partial or complete amino acid and nucleotide sequences encoding one or more particular fungal proteins. The skilled artisan, having the benefit of the sequences as reported herein, may now use all or a substantial portion of the disclosed sequences for purposes known to those killed in this art. Accordingly, the instant invention comprises the complete equences as reported in the accompanying Sequence Listing, as well as ubstantial portions of those sequences as defined above.

The term “complementary” is used to describe the relationship between nucleotide bases that are capable of hybridizing to one another. For example, with respect to DNA, adenosine is complementary to thymine and cytosine is complementary to guanine. Accordingly, the instant invention also includes isolated nucleic acid fragments that are complementary to the complete sequences as reported in the accompanying Sequence Listing as well as those substantially similar nucleic acid sequences.

The term “percent identity”, as known in the art, is a relationship between two or more polypeptide sequences or two or more polynucleotide sequences, as determined by comparing the sequences. In the art, “identity” also means the degree of sequence relatedness between polypeptide or polynucleotide sequences, as the case may be, as determined by the match between strings of such sequences. “Identity” and “similarity” can be readily calculated by known methods, including but not limited to those described in: Computational Molecular Biology (Lesk, A. M., ed.) Oxford University Press, New York (1988); Biocomputing: Informatics and Genome Projects (Smith, D. W., ed.) Academic Press, New York (1993); Computer Analysis of Sequence Data, Part I (Griffin, A. M., and Griffin, H. G., eds.) Humana Press, New Jersey (1994); Sequence Analysis in Molecular Biology (von Heinje, G., ed.) Academic Press (1987); and Seguence Analysis Primer (Gribskov, M. and Devereux, J., eds.) Stockton Press, New York (1991). Preferred methods to determine identity are designed to give the largest match between the sequences tested. Methods to determine identity and similarity are codified in publicly available computer programs. Preferred computer program methods to determine identity and similarity between two sequences include, but are not limited to, the GCG Pileup program found in the GCG program package, as used in the instant invention, using the Needleman and Wunsch algorithm with their standard default values of gap creation penalty=12 and gap extension penalty=4 (Devereux et al., Nucleic Acids Res. 12:387-395 (1984)), BLASTP, BLASTN, and FASTA (Pearson et al., Proc. Natl. Acad Sci. U.S.A. 85:2444-2448 (1988). The BLAST X program is publicly available from NCBI and other sources (BLAST Manual, Altschul et al., Natl. Cent. Biotechnol. Inf, Natl. Library Med. (NCBI NLM) NIH, Bethesda, Md. 20894; Altschul et al., J. Mol. Biol. 215:403-410 (1990)). Another preferred method to determine percent identity, is by the method of DNASTAR protein alignment protocol using the Jotun-Hein algorithm (Hein et al., Methods Enzymol. 183:626-645 (1990)). Default parameters for the Jotun-Hein method for alignments are: for multiple alignments, gap penalty=11, gap length penalty=3; for pairwise alignments ktuple=6. As an illustration, by a polynucleotide having a nucleotide sequence having at least, for example, 95% “identity” to a reference nucleotide sequence of SEQ ID NO:1 it is intended that the nucleotide sequence of the polynucleotide is identical to the reference sequence except that the polynucleotide sequence may include up to five point mutations per each 100 nucleotides of the reference nucleotide sequence of SEQ ID NO:1. In other words, to obtain a polynucleotide having a nucleotide sequence at least 95% identical to a reference nucleotide sequence, up to 5% of the nucleotides in the reference sequence may be deleted or substituted with another nucleotide, or a number of nucleotides up to 5% of the total nucleotides in the reference sequence may be inserted into the reference sequence. These mutations of the reference sequence may occur at the 5′ or 3′ terminal positions of the reference nucleotide sequence or anywhere between those terminal positions, interspersed either individually among nucleotides in the reference sequence or in one or more contiguous groups within the reference sequence. Analogously, by a polypeptide having an amino acid sequence having at least, for example, 95% identity to a reference amino acid sequence of SEQ ID NO:2 is intended that the amino acid sequence of the polypeptide is identical to the reference sequence except that the polypeptide sequence may include up to five amino acid alterations per each 100 amino acids of the reference amino acid of SEQ ID NO:2. In other words, to obtain a polypeptide having an amino acid sequence at least 95% identical to a reference amino acid sequence, up to 5% of the amino acid residues in the reference sequence may be deleted or substituted with another amino acid, or a number of amino acids up to 5% of the total amino acid residues in the reference sequence may be inserted into the reference sequence. These alterations of the reference sequence may occur at the amino or carboxy terminal positions of the reference amino acid sequence or anywhere between those terminal positions, interspersed either individually among residues in the reference sequence or in one or more contiguous groups within the reference sequence.

“Codon degeneracy” refers to divergence in the genetic code permitting variation of the nucleotide sequence without effecting the amino acid sequence of an encoded polypeptide. Accordingly, the instant invention relates to any nucleic acid fragment that encodes all or a substantial portion of the amino acid sequence encoding the bacterial adipic acid synthesizing enzymes as set forth in SEQ ID NOS: SEQ ID NO:10, SEQ ID NO:12, SEQ ID NO:20. SEQ ID NO:24, and SEQ ID NO:26. The skilled artisan is well aware of the “codon-bias” exhibited by a specific host cell in usage of nucleotide codons to specifv a given amino acid. Therefore, when synthesizing a gene for improved expression in a host cell, it is desirable to design the gene such that its frequency of codon usage approaches the frequency of preferred codon usage of the host cell.

“Synthetic genes” can be assembled from oligonucleotide building blocks that are chemically synthesized using procedures known to those skilled in the art. These building blocks are ligated and annealed to form gene segments which are then enzymatically assembled to construct the entire gene. “Chemically synthesized”, as related to a sequence of DNA, means that the component nucleotides were assembled in vitro. Manual chemical synthesis of DNA may be accomplished using well established procedures, or automated chemical synthesis can be performed using one of a number of commercially available machines. Accordingly, the genes can be tailored for optimal gene expression based on optimization of nucleotide sequence to reflect the codon bias of the host cell. The skilled artisan appreciates the likelihood of successful gene expression if codon usage is biased towards those codons favored by the host. Determination of preferred codons can be based on a survey of genes derived from the host cell where sequence information is available.

“Gene” refers to a nucleic acid fragment that expresses a specific protein, including regulatory sequences preceding (5′ non-coding sequences) and following (3′ non-coding sequences) the coding sequence. “Native gene” refers to a gene as found in nature with its own regulatory sequences. “Chimeric gene” refers any gene that is not a native gene, comprising regulatory and coding sequences that are not found together in nature. Accordingly, a chimeric gene may comprise regulatory sequences and coding sequences that are derived from different sources, or regulatory sequences and coding sequences derived from the same source, but arranged in a manner different than that found in nature. “Endogenous gene” refers to a native gene in its natural location in the genome of an organism. A “foreign” gene refers to a gene not normally found in the host organism, but that is introduced into the host organism by gene transfer. Foreign genes can comprise native genes inserted into a non-native organism, or chimeric genes. A “transgene” is a gene that has been introduced into the genome by a transformation procedure.

“Coding sequence” refers to a DNA sequence that codes for a specific amino acid sequence. “Suitable regulatory sequences” refer to nucleotide sequences located upstream (5′ non-coding sequences), within, or downstream (3′ non-coding sequences) of a coding sequence, and which influence the transcription, RNA processing or stability, or translation of the associated coding sequence. Regulatory sequences may include promoters, translation leader sequences, introns, and polyadenylation recognition sequences.

“Promoter” refers to a DNA sequence capable of controlling the expression of a coding sequence or functional RNA. In general, a coding sequence is located 3′ to a promoter sequence. Promoters may be derived in their entirety from a native gene, or be composed of different elements derived from different promoters found in nature, or even comprise synthetic DNA segments. It is understood by those skilled in the art that different promoters may direct the expression of a gene in different tissues or cell types, or at different stages of development, or in response to different environmental conditions. Promoters which cause a gene to be expressed in most cell types at most times are commonly referred to as “constitutive promoters”. It is further recognized that since in most cases the exact boundaries of regulatory sequences have not been completely defined, DNA fragments of different lengths may have identical promoter activity.

“RNA transcript” refers to the product resulting from RNA polymerase-catalyzed transcription of a DNA sequence. When the RNA transcript is a perfect complementary copy of the DNA sequence, it is referred to as the primary transcript or it may be a RNA sequence derived from posttranscriptional processing of the primary transcript and is referred to as the mature RNA. “Messenger RNA (mRNA)” refers to the RNA that is without introns and that can be translated into protein by the cell. “cDNA” refers to a double-stranded DNA that is complementary to and derived from mRNA. “Sense” RNA refers to RNA transcript that includes the mRNA and so can be translated into protein by the cell. “Antisense RNA” refers to a RNA transcript that is complementary to all or part of a target primary transcript or mRNA and that blocks the expression of a target gene (U.S. Pat. No. 5,107,065). The complementarity of an antisense RNA may be with any part of the specific gene transcript, i.e., at the 5′ non-coding sequence, 3′ non-coding sequence, introns, or the coding sequence. “Functional RNA” refers to antisense RNA, ribozyme RNA, or other RNA that is not translated yet has an effect on cellular processes.

The term “operably linked” refers to the association of nucleic acid sequences on a single nucleic acid fragment so that the function of one is affected by the other. For exarnple, a promoter is operably linked with a coding sequence when it is capable of affecting the expression of that coding sequence (i.e., that the coding sequence is under the transcriptional control of the promoter). Coding sequences can be operably linked to regulatory sequences in sense or antisense orientation.

The term “expression”, as used herein, refers to the transcription and stable accumulation of sense (mRNA) or antisense RNA derived from the nucleic acid fragment of the invention. Expression may also refer to translation of mRNA into a polypeptide.

“Mature” protein refers to a post-translationally processed polypeptide; i.e., one from which any pre- or propeptides present in the primary translation product have been removed. “Precursor” protein refers to the primary product of translation of mRNA; i.e., with pre- and propeptides still present. Pre- and propeptides may be but are not limited to intracellular localization signals.

“Transformation” refers to the transfer of a nucleic acid fragment into the genome of a host organism, resulting in genetically stable inheritance. Host organisms containing the transformed nucleic acid fragments are referred to as “transgenic” or “recombinant” or “transformed” organisms.

The terms “plasmid”, “vector” and “cassette” refer to an extra chromosomal element often carrying genes which are not part of the central metabolism of the cell, and usually in the form of circular double-stranded DNA molecules. Such elements may be autonomously replicating sequences, genome integrating sequences, phage or nucleotide sequences, linear or circular, of a single- or double-stranded DNA or RNA, derived from any source, in which a number of nucleotide sequences have been joined or recombined into a unique construction which is capable of introducing a promoter fragment and DNA sequence for a selected gene product along with appropriate 3′ untranslated sequence into a cell. “Transformation cassette” refers to a specific vector containing a foreign gene and having elements in addition to the foreign gene that facilitate transformation of a particular host cell. “Expression cassette” refers to a specific vector containing a foreign gene and having elements in addition to the foreign gene that allow for enhanced expression of that gene in a foreign host.

Standard recombinant DNA and molecular cloning techniques used here are well known in the art and are described by Sambrook, J., Fritsch, E. F. and Maniatis, T., Molecular Cloning: A Laboratory Manual, Second Edition, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. (1989) (hereinafter “Maniatis”); and by Silhavy, T. J., Bennan, M. L. and Enquist, L. W., Experiments with Gene Fusions, Cold Spring Harbor Laboratory Cold Press Spring Harbor, N.Y. (1984); and by Ausubel, F. M. et al., Current Protocols in Molecular Biology, published by Greene Publishing Assoc. and Wiley-Interscience (1987).

The nucleic acid fragments of the instant invention may be used to isolate cDNAs and genes encoding homologous enzymes from the same or other bacterial species. Isolation of homologous genes using sequence-dependent protocols is well known in the art. Examples of sequence-dependent protocols include, but are not limited to, methods of nucleic acid hybridization, and methods of DNA and RNA amplification as exemplified by various uses of nucleic acid amplification technologies (e.g., polymerase chain reaction, ligase chain reaction).

For example, genes encoding similar enzymes to those of the instant adipic acid pathway, either as cDNAs or genomic DNAs, could be isolated directly by using all or a portion of the instant nucleic acid fragments as DNA hybridization probes to screen libraries from any desired bacteria using methodology well known to those skilled in the art. Specific oligonucleotide probes based upon the instant nucleic acid sequences can be designed and synthesized by methods known in the art (Maniatis). Moreover, the entire sequences can be used directly to synthesize DNA probes bv methods known to the skilled artisan such as random primers DNA labeling, nick translation, or end-labeling techniques, or RNA probes using available in vitro transcription systems. In addition, specific primers can be designed and used to amplify a part of or full-length of the instant sequences. The resulting amplification products can be labeled directly during amplification reactions or labeled after amplification reactions, and used as probes to isolate full length cDNA or genomic fragments under conditions of appropriate stringency.

In addition, two short segments of the instant ORF's 1-13 may be used in polymerase chain reaction protocols to amplify longer nucleic acid fragments encoding homologous genes from DNA or RNA. The polymerase chain reaction may also be performed on a library of cloned nucleic acid fragments wherein the sequence of one primer is derived from the instant nucleic acid fragments, and the sequence of the other primer takes advantage of the presence of the polyadenylic acid tracts to the 3′ end of the mRNA precursor encoding bacterial genes. Alternatively, the second primer sequence may be based upon sequences derived from the cloning vector. For example, the skilled artisan can follow the RACE protocol (Frohman et al., PNAS USA 85:8998 (1988)) to generate cDNAs by using PCR to amplify copies of the region between a single point in the transcript and the 3′ or 5′ end. Primers oriented in the 3′ and 5′ directions can be designed from the instant sequences. Using commercially available 3′ RACE or 5′ RACE systems (BRL), specific 3′ or 5′ cDNA fragments can be isolated (Ohara et al., PNAS USA 86:5673 (1989); Loh et al., Science 243:217 (1989)).

Availability of the instant nucleotide and deduced amino acid sequences facilitates immunological screening cDNA expression libraries. Synthetic peptides representing portions of the instant amino acid sequences may be synthesized. These peptides can be used to immunize animals to produce polyclonal or monoclonal antibodies with specificity for peptides or proteins comprising the amino acid sequences. These antibodies can be then be used to screen cDNA expression libraries to isolate fill-length cDNA clones of interest (Lerner, R.A. Adv. Immunol. 36:1 (1984); Maniatis).

The enzymes and gene products of the instant 17 kb nucleic acid fragment may be produced in heterologous host cells, particularly in the cells of microbial hosts, and can be used to prepare antibodies to the resulting proteins by methods well known to those skilled in the art. The antibodies are useful for detecting the proteins in situ in cells or in vitro in cell extracts. Preferred heterologous host cells for production of the instant enzymes are microbial hosts. Microbial expression systems and expression vectors containing regulatory sequences that direct high level expression of foreign proteins are well known to those skilled in the art. Any of these could be used to construct chimeric oenes for production of the any of the gene products of the 17 kb fragment. These chimeric genes could then be introduced into appropriate microorganisms via transformation to provide high level expression of the enzymes.

Additionally, chimeric genes will be effective in altering the properties of the host bacteria. It is expected, for example, that introduction of chimeric genes encoding one or more of the ORF's 5, 6, 10, 12 and 13 under the control of the appropriate promoters, into a host cell comprising at least one copy of these genes will demonstrate the ability to convert cyclohexanol to cyclohexanone, cyclohexanone to ε-caprolactone; ε-caprolactone to 6-alcohol hexanonic acid; 6-alcohol hexanonic acid to 6-aldehyde hexanoic acid; and 6-aldehyde hexanoic acid to adipic acid respectively. Additionally expression of ORF's 1-4, 7-9, and 11, either separately or together may facilitate the mediation of cyclohexanol to adipic acid, or any of the intermediate steps depending on the presence or absence of these proteins in the host.

Vectors or cassettes useful for the transformation of suitable host cells are well known in the art. Typically the vector or cassette contains sequences directing transcription and translation of the relevant gene, a selectable marker, and sequences allowing autonomous replication or chromosomal integration. Suitable vectors comprise a region 5′ of the gene which harbors transcriptional initiation controls and a region 3′ of the DNA fragment which controls transcriptional termination. It is most preferred when both control regions are derived from genes homologous to the transformed host cell, although it is to be understood that such control regions need not be derived from the genes native to the specific species chosen as a production host.

Initiation control regions or promoters, which are useful to drive expression of the instant ORF's in the desired host cell are numerous and familiar to those skilled in the art. Virtually any promoter capable of driving these genes is suitable for the present invention including but not limited to CYC1, HIS3, GAL1, GAL10, ADH1, PGK, PHO5, GAPDH, ADC1, TRP1, URA3, LEU2, ENO, TPI (useful for expression in Saccharomyces); AOX1 (useful for expression in Pichia); and lac, trp, 1P_(L), 1P_(R), T7, tac, and trc (useful for expression in Escherichia coli).

Termination control regions may also be derived from various genes native to the preferred hosts. Optionally, a termination site may be unnecessary, however, it is most preferred if included.

All or a portion of the nucleic acid fragments of the instant invention may also be used as probes for genetically and physically mapping the genes that they are a part of, and as markers for traits linked to expression of the instant enzymes. For example, the instant nucleic acid fragments may be used as restriction fragment length polymorphism (RFLP) markers. Southern blots (Maniatis) of restriction-digested bacterial genomic DNA may be probed with the nucleic acid fragments of the instant invention. The resulting banding patterns may then be subjected to genetic analyses using computer programs such as MapMaker (Lander et at., Genomics 1:174-181 (1987)) in order to construct a genetic map. In addition, the nucleic acid fragments of the instant invention may be used to probe Southern blots containing restriction endonuclease-treated genomic DNAs of a set of individuals representing parent and progeny of a defined genetic cross. Segregation of the DNA polymorphisms is noted and used to calculate the position of the instant nucleic acid sequence in the genetic map previously obtained using this population (Botstein et al. Am. J. Hum. Genet. 32:314-331 (1980)).

A variety of nucleic acid amplification-based methods of genetic and physical mapping may be carried out using the instant nucleic acid sequences. Examples include allele-specific amplification, polymorphism of PCR-amplified fragments (CAPS), allele-specific ligation, nucleotide extension reactions, Radiation Hybrid Mapping and Happy Mapping. For these methods, the sequence of a nucleic acid fragment is used to design and produce primer pairs for use in the amplification reaction or in primer extension reactions. The design of such primers is well known to those skilled in the art.

DESCRIPTION OF THE PREFERRED EMBODIMENTS

The present invention relates to the isolation of genes encoding enzymes useful for the conversion of cyclohexanol to adipic acid. The relevant genes were isolated from an Acinetobacter sp. which was cultured from an industrial waste stream. Colonies that had the ability to grow on cyclohexanol as a sole carbon source were selected for further study.

In order to isolate the relevant adipic acid synthesizing genes, a cosmid library was prepared from the isolated Acinetobacter sp colonies. The cosmid library was screened for a gene encoding a monooxygenase enzyme known to be resent in the cyclohexanol degradation pathway. Screening was done with PCR rimers generated from the known monooxygenase sequence. Positive clones ontained inserts of 35-40 kb, containing homology to the monooxygenase gene. Further sequencing identified 13 open reading frames (ORF) on a 17 kb fragment. The sequences of ORF's 5, 6, 10, 12 and 13 produced deduced gene products that, in combination, provided the necessary enzymes for the conversion of cyclohexanol to adipic acid. Transformed hosts containing the 17 kb fragment demonstrated the ability to produce adipic acid from cyclohexanol, confirming the stated utility.

EXAMPLES

The present invention is further defined in the following Examples. It should be understood that these Examples, while indicating preferred embodiments of the invention, are given by way of illustration only. From the above discussion and these Examples, one skilled in the art can ascertain the essential characteristics of this invention, and without departing from the spirit and scope thereof, can make various changes and modifications of the invention to adapt it to various usages and conditions.

GENERAL METHODS

Procedures for phosphorylations, ligations and transformations are well known in the art. Techniques suitable for use in the following examples may be found in Sambrook, J., Fritsch, E. F. and Maniatis, T., Molecular Cloning: A Laboratory Manual, Second Edition, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. (1989) (hereinafter “Maniatis”).

Materials and methods suitable for the maintenance and growth of bacterial cultures are well known in the art. Techniques suitable for use in the following examples may be found as set out in Manual of Methods for General Bacteriology (Phillipp Gerhardt, R. G. E. Murray, Ralph N. Costilow, Eugene W. Nester, Willis A. Wood, Noel R. Krieg and G. Briggs Phillips, eds), American Society for Microbiology, Washington, D.C. (1994)) or by Thomas D. Brock in Biotechnology: A Textbook of Industrial Microbiology, Second Edition, Sinauer Associates, Inc., Sunderland, Mass. (1989). All reagents, restriction enzymes and materials used for the growth and maintenance of bacterial cells were obtained from Aldrich Chemicals (Milwaukee, Wis.), DIFCO Laboratories (Detroit, Mich.), GIBCO/BRL (Gaithersburg, Md.), or Sigma Chemical Company (St. Louis, Mo.) unless otherwise specified.

The meaning of abbreviations is as follows: “h” means hour(s), “min” means minute(s), “sec” means second(s), “d” means day(s), “mL” means milliliters, “L” means liters.

Bacterial Strains And Plasmids:

Acinetobacter sp. SE19 was isolated from enrichment of activated sludge obtained from an industrial wastewater treatment facility. Escherichia coli XL1-BlueMR and SuperCos 1 cosmid vector were purchased as part of the SuperCos 1 Cosmid Vector Kit from Stratagene (La Jolla, Calif.). Max Efficiency competent cells of E. coli DH5α was purchased from GIBCO/BRL (Gaithersburg, Md.). Shot-gun cloning vector pUC18 treated with Smal/BAP was also purchased from GIBCO/BRL.

Growth Conditions:

Bacterial cells were usually grown in Luria-Bertani medium containing 1% of bacto-tryptone, 0.5% of bacto-yeast extract and 1% of NaCI unless otherwise indicated below.

Synthetic S12 medium was used to establish enrichment. S12 medium contains the following: 10 mM ammonium sulfate, 50 mM potassium phosphate buffer (pH 7.0), 2 mM MgCl₂, 0.7 mM CaCl₂, 50 uM MnCl₂, 1 uM FeCl₃, 1 uM ZnCl₃, 1.72 uM CuSO₄, 2.53 uM CoCl₂, 2.42 uM Na₂MoO₂, and 0.0001% FeSO₄. The carbon sources were added directly to the S12 medium and the bacteria were grown in sealed culture flasks.

S12 agar was used to test isolates that use compounds as the sole source of carbon and energy. S12 agar was prepared by adding 1.5% Noble agar (DIFCO) to S12 medium. Bacteria growing on S12 agar were supplied with cyclopentanol or other volatile compounds as vapor by placing 5 uL of a volatile compound on the interior of the petri dish lid. The petri dish was sealed with parafilm and incubated with the lid on the bottom.

The standard M9 minimal medium was used to assay for adipic acid production from E. coli cosmid clones. The M9 medium consisted of 42.3 mM Na₂HPO₄, 22.1 mM KH₂PO₄, 8.6 mM NaCl, 18.7 mM NH₄Cl, 2 mM MgSO₄, 0.1 mM CaCl₂, 0.4% of glucose was used as the carbon source. Cyclohexanol at 330 ppm was used as the substrate for adipic acid production.

Construction Of Acinetobacter Cosmid Libraries:

Acinetobacter sp. SE19 was grown in 25 ml LB medium for 6 h at 37° C. with aeration. Bacterial cells were centrifuged at 6,000 rpm for 10 min in a Sorvall RC5C centrifuge at 4° C. Supernatant was decanted and cell pellet was frozen at −80° C. Chromosomal DNA was prepared as outlined below with special care taken to avoid shearing of DNA. The cell pellet was gently resuspended in ml of 50 mM Tris- 10 mM EDTA (pH 8) and lysozyme was added to a final concentration of 2 mg/ml. The suspension was incubated at 37° C. for 1 h. Sodium dodecyl sulfate was then added to a final concentration of 1% and proteinase K was added at 100 μg/ml. The suspension was incubated at 55° C. for 2 h. The suspension became clear and the clear lysate was extracted with equal volume of phenol:chloroform:isoamyl alcohol (25:24:1). Afier centrifuging at 12,000 rpm for 20 min, the aqueous phase was carefully removed and transfered to a new tube. Two volunes of ethanol were added and the DNA was gently spooled with a sealed glass pasteur pipet. The DNA was dipped into a tube containing 70% ethanol. After air drying, the DNA was resuspended in 400 μl of TE (10 mMTris-1 mM EDTA, pH 8) with RNaseA (100 μg/ml) and store at 4° C. The concentration and purity of DNA was determined spectrophotometrically by OD260/OD280. A diluted aliquot of DNA was run on a 0.5% agarose gel to determine the intact nature of DNA.

Chromosomal DNA was partially digested with Sau3A (GIBRO/BRL, Gaithersburg, Md.) as outlined by the instruction manual for the SuperCos 1 Cosmid Vector Kit. DNA (10 μg) was digested with 0.5 unit of Sau3A at room temperature in 100 μl of reaction volume. Aliquotes of 20 μl were withdrawn at various time points of the digestion: e.g., 0, 3, 6, 9, 12 min. DNA loading buffer was added and samples were analyzed on a 0.5% agarose gel to determine the extent of digestion. A decrease in size of chromosomal DNA corresponded to an increase in the length of time for Sau3A digestion. The preparative reaction was performed using 50 μg of DNA digested with 1 unit of Sau3A for 3 min. at room temperature. The digestion was terminated by addition of 8 mM of EDTA. The DNA was extracted once with phenol:chloroform:isoamyl alcohol and once with chloroform. The aqueous phase was adjusted to 0.3 M NaOAc and ethanol precipitated. The partially digested DNA was dephosphorylated with calf intestinal alkaline phosphatase and ligated to SuperCos 1 vector, which had been treated according to the instructions in the SuperCos 1 Cosmid Vector Kit. The ligated DNA was packaged into lamda phage using Gigapack III XL packaging extract recommended by Stratagene. Manufacturer's instructions were followed. The packaged Acinetobacter genomic DNA library contained a phage titer of 5.6×10⁴ colony forming units per μg of DNA as determined by transfecting E. coli XL1-Blue MR. Cosmid DNA was isolated from six randomly chosen E. coli transfornants and found to contain large insert of DNA (2540 kb).

Construction of Shot-gun Sequencing Libraries:

Cosmid DNA was sheared in a nebulizer (Inhalation Plastics Inc., Chicago, Ill.) at 20 psi for 45 sec and the 1-3 kb portion was gel purified. Purified DNA was treated with T4 DNA polymerase and T4 polynucleotide kinase following manufacturer's (GIBCO/BRL) instructions. Polished inserts were ligated to pUC18 vector using Ready-To-Go pUC18SmaI/BAP+Ligase (GIBCO/BRL). The ligated DNA was transformed into E. coli DH5α cells and plated on LB with ampicillin and X-gal. A majority of the transformants were white and those containing inserts were sequenced with the universal and reverse primers of pUC 18 by standard sequencing methods.

Isolation And Identification of Adipic Acid:

Cells thought to contain adipic acid were prepared for adipic acid analysis by freez-thawing, and filtration. Supernatant was subjected to HPLC analysis of adipid acid.

The HPLC system used was a Hewlett Packard 1100 series with photo diode array detector. HPLC organic acid analysis column (Aminex HPX-87H ion exclusion column, 300 mm×7.8 mm) was purchase from BioRad. The column temperature was controled at 40° C. The mobile phase was 0.004 M sulfuric acid at a flow rate of 0.6 ml/min. 100 μl of samples were injected and 210 nm was used for detection. Standard samples were prepared with known amounts of adipic acid in the medium. The retention time of adipic acid produced were compared to that of the authentic standard.

Electrospray LC/MS analysis was used to confirm or refute the presence of adipic acid in the samples. The method couples the reverse phase HPLC with a Prodigy C18 column on a Hewlett Packard 1100 machine to a Finnigan TSQ-700 mass spectrometer. The mobile phase for the HPLC was a 10 min linear gradient of 20% solvent containing acetonitrile and 0.5% acetic acid to 90% of the same solvent. The flow rate was 0.25 ml/min, with post column 50:1 splitter yielding ultimate flow to the mass spectrometer of 5 μl/min. The electrospray mass spectrometry was conducted in negative ion detection mode with scan width of 123-400 da. Confirmation of adipic acid in a sample requires the detection of peak containing 145 amu ion at the experimentally determined retention time for adipic acid.

Example 1

Isolation Of Acinetobacter Sp. From An Industrial Wastestream

Sludge was obtained from an industrial wastestrearn and bacteria were isolated from a cyclopentanol enrichment culture. Analysis of 16s rRNA gene sequences indicated that the collection of isolates included members of the bacterial genus Acinetobacter.

Bacteria described in this invention that grow on cyclohexanol were isolated from a cyclopentanol enrichment culture. The enrichment culture was established by inoculating 1 mL of activated sludge into 20 mL of S12 medium in a 125 mL screw-cap Erlenmeyer flask. The enrichment culture was supplemented with 100 ppm cyclopentanol added directly to the culture medium and was incubated at 35° C. with reciprocal shaking. The enrichment culture was maintained by adding 100 ppm cyclopentanol every 2-3 days. The culture was diluted every 2-10 days by replacing 10 mL of the culture with the same volume of S12 medium. After 15 days of incubation, serial dilutions of the enrichment ulture were spread onto LB plates. Single colonies were screened for the ability to grow on S12 liquid with cyclohexanol as the sole carbon and energy source.

The cultures were grown at 35° C. in sealed tubes. One of the isolates, SE19 was selected for further characterization.

The 16s rRNA genes of SE19 isolates were amplified by PCR and analyzed as follows. SE19 was grown on LB agar. Several colonies from the plate were suspended in 200 mL of lysis buffer (1% Triton X-100, 20 mM Tris (pH 8.5), 2 mM EDTA). The mixture was heated to 95° C. for 10 min and then centrifuged to remove cellular debris. The 16s rRNA gene sequences in the supernatant were amplified by PCR by using a commercial kit according to the manufacturer's instructions (Perkin Elmer) with HK12 primer GAG TTT GAT CCT GGC TCA G (SEQ ID NO:28) and HK13 primer TAC CTT GTT ACG ACT T (SEQ ID NO:29). PCR was performed in a Perkin Elmer GeneAmp 9600. The samples were incubated for 5 min at 94° C. and then cycled 35 times at 94° C. for 30 sec, 55° C. for 1 min and 72° C. for 1 min. The amplified 16s rRNA genes were purified using a QIAquick PCR Purification Kit according to the manufacturer's instructions (Qiagen) and sequenced on an automated ABI sequencer. The sequencing reactions were initiated with HK 12 primer, HK 13 primer and HK 14 primer GTG CCA GCA GYM GCG GT; Y=C OR T, M=A OR C (SEQ ID NO:30). The 16s rRNA gene sequence of each isolate was used as the query sequence for a BLASTN search (Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), “Gapped BLAST and PSI-BLAST: a new generation of protein database search programs”, Nucleic Acids Res. 25:3389-3402. The BlastN result of all isolates showed that SE19 has close homology to Acinetobacter haemolyticus and Acinetobacter junii, 99% nucleotide identity to each.

Example 2

Identification and Characterization of Cosmid Clones Containing Cyclohexanone Monooxypenase Gene

The cosmid library of Acinetobacter SE19 was screened based on the homology of the cyclohexanone monooxygenase gene. Two primers, monoL: GAGTCTGAGCATATGTCACAAAAAATGGATTTTG (SEQ ID NO:31) monoR: GAGTCTGAGGGATCCTTAGGCATTGGCAGGTTGCTTGAT (SEQ ID NO:32) were designed based on the published sequence of cyclohexanone monooxygenase gene ofAcinetobacter sp. NCIB 9871. The cosmid library was screened by PCR using monoL and monoR primers. Five positive clones (5B12, SF5, 8F6, 14B3 and 14D7) were identified among about 1000 clones screened. They all contain inserts of 35-40 kb that show homology to the cyclohexanone monooxygenase gene amplified by monoL and monoR primers. Southern hybridization using this gene fragment as a probe indicated that the cosmid clone 5B12 has about 20 kb region upstream of the monooxygenase gene and cosmid clone 8F6 has about 30 kb downstream of the monooxygenase gene. Cosmid clone 14B3 contains rearranged Acinetobacter DNA adjacent to the monooxygenase gene. Shot gun libraries of 5B12 and 8F6 were constructed and inserts were sequenced with pUC18 universal and reverse primers. Sequences of 200-300 clones from each library were assembled using Sequencher 3.0 program and a contig of 17419 bp containing the cyclohexanone monooxygenase gene was formed.

ORF's 1-13 from the 17 kb gene cluster were identified by conducting BLAST (Basic Local Aligrnment Search Tool; Altschul, S. F., et al., (1993) J. Mol. Biol. 215:403410; see also www.ncbi.nlm.nih.gov/BLAST/) searches for similarity to sequences contained in the BLAST “nr” database (comprising all non-redundant GenBank CDS translations, sequences derived from the 3-dimensional structure Brookhaven Protein Data Bank, SWISS-PROT protein sequence database, EMBL, and DDBJ databases). The sequences obtained were analyzed for similarity to all publicly available DNA sequences contained in the “nr” database using the BLASTN algorithm provided by the National Center for Biotechnology Information (NCBI). The DNA sequences were translated in all reading frames and compared for similarity to all publicly available protein sequences contained in the “nr” database using the BLASTX algorithm (Gish, W. and States, D. J. (1993) Nature Genetics 3:266-272) provided by the NCBI.

The sequence comparisons based on BLASTX analysis against the “nr” database are given below in Table 1 using Xnr BLAST algorithm.

TABLE 1 Gene SEQ ID SEQ ID % % ORF Name Similarity Identified base Peptide Identity^(a) Similarity^(b) E-value^(c)  1 fadC Sp|P45856|MMGB_BACSU  1  2 36 51 4e-39 3-Hydroxybutyryl-CoA Dehydrogenase [Bacillus Subtilis]  2 fadB Gi|3253197 (AF029714) PhaA  3  4 48 64 1e-60 [Pseudomonas Putida]  3 fadE Sp|P45857|ACDB_BACSU  5  6 42 59 2e-77 Acyl-CoA Dehydrogenase [Bacillus Subtilis]  4 etfD SP|P94132|ETFD_ACICA  7  8 91 95 0.0  Ubiquinone Oxidoreductase [Acinetobacter Calcoaceticus]  5 chdA Sp|P12015|CYMO_ACISP  9 10 97 97 0.0  Cyclohexanone Monooxygenase [Acinetobacter Sp.]  6 chdB Gi|1790871 (U32622) 11 12 38 57  e-105 Toluenesulfonate Aldehyde Dehydrogenase [comamonas Testosteroni]  7 chdR gnl|PID|e1182174 (Z99105) 13 14 34 54 7e-10 AraC-like transcriptional regulator [Bacillus subtilis]  8 chdZ PID|g282086|PIR: locus S27482 15 16 75 85 2e-99 hypothetical protein 1 - [Actinobacillus pleuropneumoniae.]  9 chdY PID|g130250|SWISS-PROT: 17 18 29 48 2e-37 locus PIV_MORBO, accession P20665: Pilin Gene Inverting Protein [Moraxella bovis] 10 chdC PID|g1708335|SWISS-PROT: 19 20 41 58 2e-47 locus LINC_PSEPA, accession P50197 2,5-Dichloro-2,5-Cyclohexadiene-1,4- Diol Dehydrogenase [Sphingomonas paucimobilis] 11 chdX PID|g1778844 21 22 0.26 |GENBANK: locus DDU83086, accession U83086: LimA [Dictyostelium discoideum] 12 chdD PID|g728808|SWISS-PROT: 23 24 32 52 1e-60 locus ADH1_SULSO, accession P39462: NAD-Dependent Alcohol Dehydrogenase [Sulfolobus solfataricus] 13 chdE PID|g1352065|SWISS-PROT: 25 26 36 51 2e-32 locus BAH_STRHY, accession Q01109: Acetyl-Hydrolase [Streptomyces hygroscopicus] ^(a)% Identity is defined as percentage of amino acids that are identical between the two proteins. ^(b)% Similarity is defined as percentage of amino acids that are identical or conserved between the two proteins. ^(c)Expect value. The Expect value estimates the statistical significance of the match, specifying the number of matches, with a given score, that are expected in a search of a database of this size absolutely by chance.

BLAST results indicated that the sequence with the greatest homology to ORF5 encoding the monooxygenase was 97% identical and 97% similar to the gene published by Chen et al. J. Bacteriol. 170 (2), 781-789 (1988). The sequence with the greatest homology to ORF6 encoding the enzyme responsible for the conversion of 6-aldehyde hexanoic acid to adipic acid was 38% identical and 57% similar to the gene published by Junker et al., J. Bacteriol. 179 (3), 919-927 (1997). The sequence with the greatest homology to ORFIO encoding the enzyme responsible for the conversion of cyclohexanol to cyclohexanone was 41% identical and 58% similar to the gene published by Nagata et al., J. Bacteriol. 176 (11), 3117-3125 (1994). The sequence with the greatest homology to ORF 12 encoding the enzyme responsible for the conversion of 6-alcohol hexanoic acid to 6-aldehyde hexanoic acid was 32% identical and 52% similar to the gene published by Ammendola et al., Biochemistry 31 (49), 12514-12523 (1992). The sequence with the greatest homology to ORF 13 encoding the enzyme responsible for the conversion of caprolactone to 6-hexanoic acid was 36% identical and 51% similar to the gene published by Raibaud et al., J. Bacteriol. 173 (14), 4454-4463 (1991).

Example 3

Conversion of Cyclohexanol to Adipic Acid by E. coli Cosmid Clones

Five E. coli cosmid clones containing the gene cluster and the E. coli strain containing the supercos vector control were grown in M9 minimal medium supplemented with 0.4% glucose as the carbon source. Cells were grown at 30° C. with shaking for 2 h and 330 ppm of cyclohexanol was added. Cells were further incubated at 30° C. and 1 ml of samples were taken 2 h, 4 h and 20 h after addition of cyclohexanol. Control culture consisted of the host strains transformed only with the supercos vector was grown under the same conditions.

Samples were frozen at −80° C. and thawed at 37° C. Freeze-thawing was repeated three times. Cells were pelleted and supernatants were passed through 0.22 μm disc filters. The filtered supernatants were analyzed by HPLC, as described above.

Four out of five cosmid clones 5B12, 5F5, 8F6 and 14D7 tested positive for adipic acid production. The amount of adipic acid produced was seen to increase with time (FIG. 3). One cosmid clone 14B3 showed no adipic acid production (equivalent to the vector control), even after 20 h growth. The rearranged Acinetobacter chromosomal DNA flanking the monooxygenase gene region revealed by Southern hybridization in 14B3 accounted for the no production of adipic acid. The adipic acid detected in the positive cosmid clones was estimated to be 200-400 ppm on the basis of HPLC analysis. The supercos control was negative for adipic acid production with the estimated detection limit of<10 ppm.

Conversion of cyclohexanol to adipic acid by E. coli cosmid clones was also confirmed by electrospray LC/MS analysis. The major ion observed in the negative ion electrospray mass spectrum of the adipic acid peak eluted at the expected retension time appears at 145 amu, which agrees with the molecular weight of the deprotonated adipic acid.

32 1 543 DNA Acinetobacter sp. 1 atgacgattc aaaaaatggc cttgattggc acaggcgtaa tgggaatggg tattgcgcaa 60 attgcagcac aggcgggtgt tgaggtccgt ttatttgatg ctaaacccgg cgctgctgag 120 caaggcttgg aaaaattaaa agtaaccttg cacaaactag ctgctaaagg aaagttaacc 180 gaacagcagc ttgtggatac cttagcccga ttgattatct tggaaagcat tgaagaggtt 240 gctggcgttg atctggtcgt agaagcaatt attgaaaatc tggaaatcaa gcaaactttg 300 tttaaacagc ttgaaaggat tgtggctgaa gaaactattc tggtttcaaa tacatcctca 360 ctatctgtga cctcaattgc atctgcgtgt cagcatcagg gccgtatcgc aggtttccat 420 ttcttcaatc cggttccact gatgaaaatt gtggaagtga ttgcggggtt ggctacagat 480 gagcaagtcg tagtcgactt actggatctg gcgaccgcat gggactttgg gtgtccggac 540 taa 543 2 180 PRT Acinetobacter sp. 2 Met Thr Ile Gln Lys Met Ala Leu Ile Gly Thr Gly Val Met Gly Met 1 5 10 15 Gly Ile Ala Gln Ile Ala Ala Gln Ala Gly Val Glu Val Arg Leu Phe 20 25 30 Asp Ala Lys Pro Gly Ala Ala Glu Gln Gly Leu Glu Lys Leu Lys Val 35 40 45 Thr Leu His Lys Leu Ala Ala Lys Gly Lys Leu Thr Glu Gln Gln Leu 50 55 60 Val Asp Thr Leu Ala Arg Leu Ile Ile Leu Glu Ser Ile Glu Glu Val 65 70 75 80 Ala Gly Val Asp Leu Val Val Glu Ala Ile Ile Glu Asn Leu Glu Ile 85 90 95 Lys Gln Thr Leu Phe Lys Gln Leu Glu Arg Ile Val Ala Glu Glu Thr 100 105 110 Ile Leu Val Ser Asn Thr Ser Ser Leu Ser Val Thr Ser Ile Ala Ser 115 120 125 Ala Cys Gln His Gln Gly Arg Ile Ala Gly Phe His Phe Phe Asn Pro 130 135 140 Val Pro Leu Met Lys Ile Val Glu Val Ile Ala Gly Leu Ala Thr Asp 145 150 155 160 Glu Gln Val Val Ser Thr Tyr Trp Ile Trp Arg Pro His Gly Thr Leu 165 170 175 Gly Val Arg Thr 180 3 777 DNA Acinetobacter sp. 3 atggaaaatg aaatattgaa tttagatatt caaagtaatg gtgtggccat tgttgaacta 60 catcgtccag atactagaaa tgcattgaat ctggaactgc gccaacagct cgcagcaatg 120 tttgagcagc tcgctgcatc tgatacagtc cgcgcaattg tcattactgg tggtgaaaaa 180 gtatttgcag caggtgcgga tatccgggac ttcaccactg caaaaaccgt agacatgtat 240 ttacgccata cggaacagta ctggcgggcc attattgatt gccctaaacc gattgtggct 300 gctgtgaatg gatatgcatt gggtggtggg tgtgaacttg caatgcatgc agacatcatt 360 attgccggaa aatcagccca gtttggtcag cctgaagtca aattggggct gatgccaggt 420 gctggtggta cccaacgctt actgcgtgcg gtagggaagt ttaaagccat gcaaatagtg 480 ttaacaggaa agatcttttc tgcagaagaa gctgacaaaa tggggttggt ttccgaagtg 540 gttgaggatg atcaaaccct tgctaaagcg gttgaaattg cgacacagat tgcccaactc 600 tcaccgattg ccgttgaaca gatcaaagaa gtcacaacac taggtgccaa tatgccactc 660 gatggtgctt tggcattaga gcgtaaagcc ttccaaattt tatttgatac acaagatcaa 720 aaagaaggcg tcaatgcctt tttcgaaaag cgaagccctc aatatcaagg aaaataa 777 4 258 PRT Acinetobacter sp. 4 Met Glu Asn Glu Ile Leu Asn Leu Asp Ile Gln Ser Asn Gly Val Ala 1 5 10 15 Ile Val Glu Leu His Arg Pro Asp Thr Arg Asn Ala Leu Asn Leu Glu 20 25 30 Leu Arg Gln Gln Leu Ala Ala Met Phe Glu Gln Leu Ala Ala Ser Asp 35 40 45 Thr Val Arg Ala Ile Val Ile Thr Gly Gly Glu Lys Val Phe Ala Ala 50 55 60 Gly Ala Asp Ile Arg Asp Phe Thr Thr Ala Lys Thr Val Asp Met Tyr 65 70 75 80 Leu Arg His Thr Glu Gln Tyr Trp Arg Ala Ile Ile Asp Cys Pro Lys 85 90 95 Pro Ile Val Ala Ala Val Asn Gly Tyr Ala Leu Gly Gly Gly Cys Glu 100 105 110 Leu Ala Met His Ala Asp Ile Ile Ile Ala Gly Lys Ser Ala Gln Phe 115 120 125 Gly Gln Pro Glu Val Lys Leu Gly Leu Met Pro Gly Ala Gly Gly Thr 130 135 140 Gln Arg Leu Leu Arg Ala Val Gly Lys Phe Lys Ala Met Gln Ile Val 145 150 155 160 Leu Thr Gly Lys Ile Phe Ser Ala Glu Glu Ala Asp Lys Met Gly Leu 165 170 175 Val Ser Glu Val Val Glu Asp Asp Gln Thr Leu Ala Lys Ala Val Glu 180 185 190 Ile Ala Thr Gln Ile Ala Gln Leu Ser Pro Ile Ala Val Glu Gln Ile 195 200 205 Lys Glu Val Thr Thr Leu Gly Ala Asn Met Pro Leu Asp Gly Ala Leu 210 215 220 Ala Leu Glu Arg Lys Ala Phe Gln Ile Leu Phe Asp Thr Gln Asp Gln 225 230 235 240 Lys Glu Gly Val Asn Ala Phe Phe Glu Lys Arg Ser Pro Gln Tyr Gln 245 250 255 Gly Lys 5 1155 DNA Acinetobacter sp. 5 atgattcgcg atcaagacac attaaatcag ctggttgaca tgatccgtca gtttgtcgat 60 ggcgttctta ttcccaatga agaaattgtt gcggaaaccg atgaaattcc agctgaaatc 120 gtgcagcaaa tgaaagaact gggtcttttt ggtctcacca ttcctgagga atatgagggt 180 cttggcctga ccatggagga agaggtttac attgcatttg aactgggacg tacctctcct 240 gctttccgtt cactgatcgg cactaacaat gggatcggtt catcaggctt aattattgat 300 ggctccgaag agcagaaaca gtattttttg ccacgtctgg caagtggtga aattattggt 360 tcattctgtt taactgaacc tgattccggt tcagatgctg cctctttaaa aaccacagcg 420 gtgaaagatg gtgatcatta cattttaaat ggcactaagc gttacatcac caatgcaccg 480 catgcgggtg tctttactgt catggcacgt accagtaccg aaattaaagg tacaggtgga 540 atttcagcct ttatcgtgga cagtaaaact cctggtattt ccttgggtaa acgtgataag 600 aagatgggcc aaaaaggtgc acatacctgt gatgtgattt ttgaaaactg tcgtattcct 660 gcatctgcac tcattggtgg tgttgaaggt gtaggtttta aaactgcaat gaaggtactt 720 gataaaggcc gtattcatat tgctgcatta agtgtaggtg ctgctacgcg tatgctggaa 780 gattccctac aatatgccgt tgagcgcaaa cagtttggtc aagcgattgc gaacttccag 840 ttgattcaag gtatgttagc cgattctaaa gctgaaattt acgcagcaaa atgtatggta 900 ttagatgctg cccgacttcg tgatgctgga cagaatgtca gcacggaagc atcttgtgcc 960 aagatgtttg ccactgaaat gtgtggccgt gtcgcagatc gtggcgtaca gatccatggt 1020 ggtgcgggtt atatcagtga atatgctatt gagcgttttt accgtgatgt acgtttattc 1080 cgtttgtatg aaggtacaac gcaaatccaa caggtcatta ttgcccgcaa tatgatccgt 1140 gaagcgactc aataa 1155 6 384 PRT Acinetobacter sp. 6 Met Ile Arg Asp Gln Asp Thr Leu Asn Gln Leu Val Asp Met Ile Arg 1 5 10 15 Gln Phe Val Asp Gly Val Leu Ile Pro Asn Glu Glu Ile Val Ala Glu 20 25 30 Thr Asp Glu Ile Pro Ala Glu Ile Val Gln Gln Met Lys Glu Leu Gly 35 40 45 Leu Phe Gly Leu Thr Ile Pro Glu Glu Tyr Glu Gly Leu Gly Leu Thr 50 55 60 Met Glu Glu Glu Val Tyr Ile Ala Phe Glu Leu Gly Arg Thr Ser Pro 65 70 75 80 Ala Phe Arg Ser Leu Ile Gly Thr Asn Asn Gly Ile Gly Ser Ser Gly 85 90 95 Leu Ile Ile Asp Gly Ser Glu Glu Gln Lys Gln Tyr Phe Leu Pro Arg 100 105 110 Leu Ala Ser Gly Glu Ile Ile Gly Ser Phe Cys Leu Thr Glu Pro Asp 115 120 125 Ser Gly Ser Asp Ala Ala Ser Leu Lys Thr Thr Ala Val Lys Asp Gly 130 135 140 Asp His Tyr Ile Leu Asn Gly Thr Lys Arg Tyr Ile Thr Asn Ala Pro 145 150 155 160 His Ala Gly Val Phe Thr Val Met Ala Arg Thr Ser Thr Glu Ile Lys 165 170 175 Gly Thr Gly Gly Ile Ser Ala Phe Ile Val Asp Ser Lys Thr Pro Gly 180 185 190 Ile Ser Leu Gly Lys Arg Asp Lys Lys Met Gly Gln Lys Gly Ala His 195 200 205 Thr Cys Asp Val Ile Phe Glu Asn Cys Arg Ile Pro Ala Ser Ala Leu 210 215 220 Ile Gly Gly Val Glu Gly Val Gly Phe Lys Thr Ala Met Lys Val Leu 225 230 235 240 Asp Lys Gly Arg Ile His Ile Ala Ala Leu Ser Val Gly Ala Ala Thr 245 250 255 Arg Met Leu Glu Asp Ser Leu Gln Tyr Ala Val Glu Arg Lys Gln Phe 260 265 270 Gly Gln Ala Ile Ala Asn Phe Gln Leu Ile Gln Gly Met Leu Ala Asp 275 280 285 Ser Lys Ala Glu Ile Tyr Ala Ala Lys Cys Met Val Leu Asp Ala Ala 290 295 300 Arg Leu Arg Asp Ala Gly Gln Asn Val Ser Thr Glu Ala Ser Cys Ala 305 310 315 320 Lys Met Phe Ala Thr Glu Met Cys Gly Arg Val Ala Asp Arg Gly Val 325 330 335 Gln Ile His Gly Gly Ala Gly Tyr Ile Ser Glu Tyr Ala Ile Glu Arg 340 345 350 Phe Tyr Arg Asp Val Arg Leu Phe Arg Leu Tyr Glu Gly Thr Thr Gln 355 360 365 Ile Gln Gln Val Ile Ile Ala Arg Asn Met Ile Arg Glu Ala Thr Gln 370 375 380 7 1719 DNA Acinetobacter sp. 7 atgcaagaac aagaaatcga acgcgaatca atggagtttg acgtcgtgat tgtcggcgca 60 ggaccggccg gtctttctgc agcgatcaag atccgtcaac ttgcaattga aaacaacctg 120 aacgatctgt cggtttgtgt ggtggaaaaa ggctctgaag tcggtgcgca catcttgtcc 180 ggtgcggtac tggaaccacg tgccatgaat gagctgttcc cgaactggaa ggaagaaggt 240 gcacctttaa atgttccagt gaccgaagac aagacctatt tcctgctctc ggatgaaaaa 300 tcacaagaag cgccacactg gatggtgcct aaaaccatgc ataacgatgg caactatgtt 360 atctcgctcg gcaacgtagt gcgctggttg ggtcaaaaag cggaagagct ggaagtatct 420 attttcccgg gctttgccgc tgctgaaatt ctgtaccatg cagatggttc ggtgaaaggc 480 attcaaaccg gtgacatggg cattggcaag gatggcgaac cgacccataa ctttactccg 540 ggctatgaac tgcatgccaa atacaccctg tttgctgaag gctgccgtgg ccacctcggc 600 aagcgtttaa ttgccaaata caacctcgat aaagattcag atccacaaca ttacggtatc 660 ggtatcaaag agctgtggga aatcgacccg gcgaaacaca agccaggtct ggtgatgcac 720 ggtgccggct ggccattgtc tgaaaccggt tcttcaggcg gctggtggtt gtatcatgcg 780 gaaaacaatc aggtgacttt gggcatgatc gtcgatctgt cttacaccaa cccgcatatg 840 tatccgttta tggaaatgca gcgctggaaa acccatccgc tgatcaagca gtatctggaa 900 ggtggcaaac gtatttctta tggcgcgcgt gcggtaacca aaggcggctt taactcgcta 960 ccgaaattta ccttcccggg cggatcgctg attggtgacg atgccggctt cctgaacttt 1020 gccaaaatca agggctcaca taccgcgatg aaatccggca tgctctgcgg tgaagcagtg 1080 tttgaagcca ttgctgccgg tgtggaaaaa ggtggtgacc ttgcggttgc gcgtgtgacg 1140 gaaggcgaag acttgtttgc caaaaaactg acttcttaca ccgacaagtt caataatagc 1200 tggctgaaag aagagctgta caactcgcgt aactttggcc cggccatgca caagtttggt 1260 cagtggctcg gtggtgcgtt taactttatc gaccagaacg tgtttaaggt gccgtttacc 1320 ctgcatgacc tggtgacgga tttcggtgcg ctgaaaaccg tcgatgcggt gaacttcaag 1380 ccgaattatc caaaaccgga tggcaaactg acctttgacc gtctgtcttc ggtgtttgta 1440 tccaacacgg tgcatgaaga aaaccagcca gcgcatttaa aactgactga cacttcgatt 1500 ccggtgaatg tcaacctgcc aaaatgggat gaaccggcgc agcgctactg ccccgcgggt 1560 gtatacgaaa tcatggaaaa tgatgacggt tcgaaacgct tccagatcaa tgcagccaac 1620 tgtgtgcact gcaagacctg tgacatcaag gatccttcac agaacatcac ctgggtaaca 1680 ccggaaggtg gtggtggtcc aaactatccg aatatgtaa 1719 8 572 PRT Acinetobacter sp. 8 Met Gln Glu Gln Glu Ile Glu Arg Glu Ser Met Glu Phe Asp Val Val 1 5 10 15 Ile Val Gly Ala Gly Pro Ala Gly Leu Ser Ala Ala Ile Lys Ile Arg 20 25 30 Gln Leu Ala Ile Glu Asn Asn Leu Asn Asp Leu Ser Val Cys Val Val 35 40 45 Glu Lys Gly Ser Glu Val Gly Ala His Ile Leu Ser Gly Ala Val Leu 50 55 60 Glu Pro Arg Ala Met Asn Glu Leu Phe Pro Asn Trp Lys Glu Glu Gly 65 70 75 80 Ala Pro Leu Asn Val Pro Val Thr Glu Asp Lys Thr Tyr Phe Leu Leu 85 90 95 Ser Asp Glu Lys Ser Gln Glu Ala Pro His Trp Met Val Pro Lys Thr 100 105 110 Met His Asn Asp Gly Asn Tyr Val Ile Ser Leu Gly Asn Val Val Arg 115 120 125 Trp Leu Gly Gln Lys Ala Glu Glu Leu Glu Val Ser Ile Phe Pro Gly 130 135 140 Phe Ala Ala Ala Glu Ile Leu Tyr His Ala Asp Gly Ser Val Lys Gly 145 150 155 160 Ile Gln Thr Gly Asp Met Gly Ile Gly Lys Asp Gly Glu Pro Thr His 165 170 175 Asn Phe Thr Pro Gly Tyr Glu Leu His Ala Lys Tyr Thr Leu Phe Ala 180 185 190 Glu Gly Cys Arg Gly His Leu Gly Lys Arg Leu Ile Ala Lys Tyr Asn 195 200 205 Leu Asp Lys Asp Ser Asp Pro Gln His Tyr Gly Ile Gly Ile Lys Glu 210 215 220 Leu Trp Glu Ile Asp Pro Ala Lys His Lys Pro Gly Leu Val Met His 225 230 235 240 Gly Ala Gly Trp Pro Leu Ser Glu Thr Gly Ser Ser Gly Gly Trp Trp 245 250 255 Leu Tyr His Ala Glu Asn Asn Gln Val Thr Leu Gly Met Ile Val Asp 260 265 270 Leu Ser Tyr Thr Asn Pro His Met Tyr Pro Phe Met Glu Met Gln Arg 275 280 285 Trp Lys Thr His Pro Leu Ile Lys Gln Tyr Leu Glu Gly Gly Lys Arg 290 295 300 Ile Ser Tyr Gly Ala Arg Ala Val Thr Lys Gly Gly Phe Asn Ser Leu 305 310 315 320 Pro Lys Phe Thr Phe Pro Gly Gly Ser Leu Ile Gly Asp Asp Ala Gly 325 330 335 Phe Leu Asn Phe Ala Lys Ile Lys Gly Ser His Thr Ala Met Lys Ser 340 345 350 Gly Met Leu Cys Gly Glu Ala Val Phe Glu Ala Ile Ala Ala Gly Val 355 360 365 Glu Lys Gly Gly Asp Leu Ala Val Ala Arg Val Thr Glu Gly Glu Asp 370 375 380 Leu Phe Ala Lys Lys Leu Thr Ser Tyr Thr Asp Lys Phe Asn Asn Ser 385 390 395 400 Trp Leu Lys Glu Glu Leu Tyr Asn Ser Arg Asn Phe Gly Pro Ala Met 405 410 415 His Lys Phe Gly Gln Trp Leu Gly Gly Ala Phe Asn Phe Ile Asp Gln 420 425 430 Asn Val Phe Lys Val Pro Phe Thr Leu His Asp Leu Val Thr Asp Phe 435 440 445 Gly Ala Leu Lys Thr Val Asp Ala Val Asn Phe Lys Pro Asn Tyr Pro 450 455 460 Lys Pro Asp Gly Lys Leu Thr Phe Asp Arg Leu Ser Ser Val Phe Val 465 470 475 480 Ser Asn Thr Val His Glu Glu Asn Gln Pro Ala His Leu Lys Leu Thr 485 490 495 Asp Thr Ser Ile Pro Val Asn Val Asn Leu Pro Lys Trp Asp Glu Pro 500 505 510 Ala Gln Arg Tyr Cys Pro Ala Gly Val Tyr Glu Ile Met Glu Asn Asp 515 520 525 Asp Gly Ser Lys Arg Phe Gln Ile Asn Ala Ala Asn Cys Val His Cys 530 535 540 Lys Thr Cys Asp Ile Lys Asp Pro Ser Gln Asn Ile Thr Trp Val Thr 545 550 555 560 Pro Glu Gly Gly Gly Gly Pro Asn Tyr Pro Asn Met 565 570 9 1644 DNA Acinetobacter sp. 9 atggagatta tcatgtcaca aaaaatggat tttgatgcta tcgtgattgg tggtggtttt 60 ggcggacttt atgcagtcaa aaaattaaga gacgagctcg aacttaaggt tcaggctttt 120 gataaagcca cggatgtcgc aggtacttgg tactggaacc gttacccagg tgcattgtcg 180 gatacagaaa cccacctcta ctgctattct tgggataaag aattactaca atcgctagaa 240 atcaagaaaa aatatgtgca aggccctgat gtacgcaagt atttacagca agtggctgaa 300 aagcatgatt taaagaagag ctatcaattc aataccgcgg ttcaatcggc tcattacaac 360 gaagcagatg ccttgtggga agtcaccact gaatatggtg ataagtacac ggcgcgtttc 420 ctcatcactg ctttaggctt attgtctgcg cctaacttgc caaacatcaa aggcattaat 480 cagtttaaag gtgagctgca tcataccagc cgctggccag atgacgtaag ttttgaaggt 540 aaacgtgtcg gcgtgattgg tacgggttcc accggtgttc aggttattac ggctgtggca 600 cctctggcta aacacctcac tgtcttccag cgttctgcac aatacagcgt tccaattggc 660 aatgatccac tgtctgaaga agatgttaaa aagatcaaag acaattatga caaaatttgg 720 gatggtgtat ggaattcagc ccttgccttt ggcctgaatg aaagcacagt gccagcaatg 780 agcgtatcag ctgaagaacg caaggcagtt tttgaaaagg catggcaaac aggtggcggt 840 ttccgtttca tgtttgaaac tttcggtgat attgccacca atatggaagc caatatcgaa 900 gcgcaaaatt tcattaaggg taaaattgct gaaatcgtca aagatccagc cattgcacag 960 aagcttatgc cacaggattt gtatgcaaaa cgtccgttgt gtgacagtgg ttactacaac 1020 acctttaacc gtgacaatgt ccgtttagaa gatgtgaaag ccaatccgat tgttgaaatt 1080 accgaaaacg gtgtgaaact cgaaaatggc gatttcgttg aattagacat gctgatatgt 1140 gccacaggtt ttgatgccgt cgatggcaac tatgtgcgca tggacattca aggtaaaaac 1200 ggcttggcca tgaaagacta ctggaaagaa ggtccgtcga gctatatggg tgtcaccgta 1260 aataactatc caaacatgtt catggtgctt ggaccgaatg gcccgtttac caacctgccg 1320 ccatcaattg aatcacaggt ggaatggatc agtgatacca ttcaatacac ggttgaaaac 1380 aatgttgaat ccattgaagc gacaaaagaa gcggaagaac aatggactca aacttgcgcc 1440 aatattgcgg aaatgacctt attccctaaa gcgcaatcct ggatttttgg tgcgaatatc 1500 ccgggcaaga aaaacacggt ttacttctat ctcggtggtt taaaagaata tcgcagtgcg 1560 ctagccaact gcaaaaacca tgcctatgaa ggttttgata ttcaattaca acgttcagat 1620 atcaagcaac ctgccaatgc ctaa 1644 10 547 PRT Acinetobacter sp. 10 Met Glu Ile Ile Met Ser Gln Lys Met Asp Phe Asp Ala Ile Val Ile 1 5 10 15 Gly Gly Gly Phe Gly Gly Leu Tyr Ala Val Lys Lys Leu Arg Asp Glu 20 25 30 Leu Glu Leu Lys Val Gln Ala Phe Asp Lys Ala Thr Asp Val Ala Gly 35 40 45 Thr Trp Tyr Trp Asn Arg Tyr Pro Gly Ala Leu Ser Asp Thr Glu Thr 50 55 60 His Leu Tyr Cys Tyr Ser Trp Asp Lys Glu Leu Leu Gln Ser Leu Glu 65 70 75 80 Ile Lys Lys Lys Tyr Val Gln Gly Pro Asp Val Arg Lys Tyr Leu Gln 85 90 95 Gln Val Ala Glu Lys His Asp Leu Lys Lys Ser Tyr Gln Phe Asn Thr 100 105 110 Ala Val Gln Ser Ala His Tyr Asn Glu Ala Asp Ala Leu Trp Glu Val 115 120 125 Thr Thr Glu Tyr Gly Asp Lys Tyr Thr Ala Arg Phe Leu Ile Thr Ala 130 135 140 Leu Gly Leu Leu Ser Ala Pro Asn Leu Pro Asn Ile Lys Gly Ile Asn 145 150 155 160 Gln Phe Lys Gly Glu Leu His His Thr Ser Arg Trp Pro Asp Asp Val 165 170 175 Ser Phe Glu Gly Lys Arg Val Gly Val Ile Gly Thr Gly Ser Thr Gly 180 185 190 Val Gln Val Ile Thr Ala Val Ala Pro Leu Ala Lys His Leu Thr Val 195 200 205 Phe Gln Arg Ser Ala Gln Tyr Ser Val Pro Ile Gly Asn Asp Pro Leu 210 215 220 Ser Glu Glu Asp Val Lys Lys Ile Lys Asp Asn Tyr Asp Lys Ile Trp 225 230 235 240 Asp Gly Val Trp Asn Ser Ala Leu Ala Phe Gly Leu Asn Glu Ser Thr 245 250 255 Val Pro Ala Met Ser Val Ser Ala Glu Glu Arg Lys Ala Val Phe Glu 260 265 270 Lys Ala Trp Gln Thr Gly Gly Gly Phe Arg Phe Met Phe Glu Thr Phe 275 280 285 Gly Asp Ile Ala Thr Asn Met Glu Ala Asn Ile Glu Ala Gln Asn Phe 290 295 300 Ile Lys Gly Lys Ile Ala Glu Ile Val Lys Asp Pro Ala Ile Ala Gln 305 310 315 320 Lys Leu Met Pro Gln Asp Leu Tyr Ala Lys Arg Pro Leu Cys Asp Ser 325 330 335 Gly Tyr Tyr Asn Thr Phe Asn Arg Asp Asn Val Arg Leu Glu Asp Val 340 345 350 Lys Ala Asn Pro Ile Val Glu Ile Thr Glu Asn Gly Val Lys Leu Glu 355 360 365 Asn Gly Asp Phe Val Glu Leu Asp Met Leu Ile Cys Ala Thr Gly Phe 370 375 380 Asp Ala Val Asp Gly Asn Tyr Val Arg Met Asp Ile Gln Gly Lys Asn 385 390 395 400 Gly Leu Ala Met Lys Asp Tyr Trp Lys Glu Gly Pro Ser Ser Tyr Met 405 410 415 Gly Val Thr Val Asn Asn Tyr Pro Asn Met Phe Met Val Leu Gly Pro 420 425 430 Asn Gly Pro Phe Thr Asn Leu Pro Pro Ser Ile Glu Ser Gln Val Glu 435 440 445 Trp Ile Ser Asp Thr Ile Gln Tyr Thr Val Glu Asn Asn Val Glu Ser 450 455 460 Ile Glu Ala Thr Lys Glu Ala Glu Glu Gln Trp Thr Gln Thr Cys Ala 465 470 475 480 Asn Ile Ala Glu Met Thr Leu Phe Pro Lys Ala Gln Ser Trp Ile Phe 485 490 495 Gly Ala Asn Ile Pro Gly Lys Lys Asn Thr Val Tyr Phe Tyr Leu Gly 500 505 510 Gly Leu Lys Glu Tyr Arg Ser Ala Leu Ala Asn Cys Lys Asn His Ala 515 520 525 Tyr Glu Gly Phe Asp Ile Gln Leu Gln Arg Ser Asp Ile Lys Gln Pro 530 535 540 Ala Asn Ala 545 11 1497 DNA Acinetobacter sp. 11 atggggggca tcccccatat tccattttgt ttaacatcag tcatatgcca gggatgtctt 60 atcatgaact atccaaatat acctttatat atcaacggtg agtttctaga tcataccaat 120 agagacgtca aagaagtttt taatccagtg aaccatgaat gtattggact catggcctgt 180 gcatcacaag cagacctgga ctacgcactt gaaagttcac aacaggcttt tctaaggtgg 240 aaaaaaactt ctcctatcac ccgtagtgaa atcctcagaa cctttgcgaa actagcgcgt 300 gaaaaagcag cagaaatcgg gcgcaatatt acccttgatc aaggtaagcc cctgaaagaa 360 gccattgcag aagtcactgt ctgtgcagaa catgcagaat ggcatgcaga agaatgccga 420 cgcatttatg gccgtgttat tccaccgcgt aacccaaatg tacagcaact agtagtcaga 480 gaaccgctgg gcgtatgtct ggcattttca ccgtggaatt tcccgtttaa tcaggcaatt 540 cgtaaaattt ctgctgcaat tgctgccggc tgcaccatca ttgtgaaagg ttctggcgac 600 acaccaagcg cggtatatgc gattgcccag ctatttcatg aggcgggttt gccgaatggt 660 gtgctgaatg tgatttgggg tgactcaaac ttcatttctg attacatgat caaatcgccg 720 atcatccaaa agatttcatt cacaggctca accccggtgg gtaaaaaatt agcctcgcaa 780 gcgagtctgt atatgaagcc ttgcaccatg gaattgggtg gtcatgcacc ggtcatcgtc 840 tgtgatgatg ctgatattga tgccgctgtt gaacatctgg tcggttataa attccgtaat 900 gcaggacagg tctgtgtatc accaacccgt ttttatgtgc aggaaggtat ttataaggaa 960 ttttctgaga aagtggtgtt aagagccaaa cagatcaaag tgggttgtgg cttagacgca 1020 tcctcagata tgggaccatt ggctcaagct cgccgcatgc atgcaatgca acaaattgtt 1080 gaagatgcgg ttcataaagg ctcaaaatta ctgcttggcg gaaataaaat ttctgacaaa 1140 ggcaattttt ttgaaccaac ggtactcggt gacttgtgca atgacaccca gtttatgaat 1200 gacgagccat ttggtccgat cattggtttg ataccttttg acacaataga ccatgtcctg 1260 gaagaagcaa atcgattacc atttggatta gcctcttacg cttttaccac atccagcaaa 1320 aatgcgcatc aaatctcata cggactggag gctggcatgg tttcgattaa ccacatggga 1380 ttggcgctcg ctgaaacacc ttttggtggt attaaggata gcggttttgg tagtgaaggg 1440 ggtatcgaaa cctttgacgg ttacctcaga accaaattta ttacgcaact caattag 1497 12 498 PRT Acinetobacter sp. 12 Met Gly Gly Ile Pro His Ile Pro Phe Cys Leu Thr Ser Val Ile Cys 1 5 10 15 Gln Gly Cys Leu Ile Met Asn Tyr Pro Asn Ile Pro Leu Tyr Ile Asn 20 25 30 Gly Glu Phe Leu Asp His Thr Asn Arg Asp Val Lys Glu Val Phe Asn 35 40 45 Pro Val Asn His Glu Cys Ile Gly Leu Met Ala Cys Ala Ser Gln Ala 50 55 60 Asp Leu Asp Tyr Ala Leu Glu Ser Ser Gln Gln Ala Phe Leu Arg Trp 65 70 75 80 Lys Lys Thr Ser Pro Ile Thr Arg Ser Glu Ile Leu Arg Thr Phe Ala 85 90 95 Lys Leu Ala Arg Glu Lys Ala Ala Glu Ile Gly Arg Asn Ile Thr Leu 100 105 110 Asp Gln Gly Lys Pro Leu Lys Glu Ala Ile Ala Glu Val Thr Val Cys 115 120 125 Ala Glu His Ala Glu Trp His Ala Glu Glu Cys Arg Arg Ile Tyr Gly 130 135 140 Arg Val Ile Pro Pro Arg Asn Pro Asn Val Gln Gln Leu Val Val Arg 145 150 155 160 Glu Pro Leu Gly Val Cys Leu Ala Phe Ser Pro Trp Asn Phe Pro Phe 165 170 175 Asn Gln Ala Ile Arg Lys Ile Ser Ala Ala Ile Ala Ala Gly Cys Thr 180 185 190 Ile Ile Val Lys Gly Ser Gly Asp Thr Pro Ser Ala Val Tyr Ala Ile 195 200 205 Ala Gln Leu Phe His Glu Ala Gly Leu Pro Asn Gly Val Leu Asn Val 210 215 220 Ile Trp Gly Asp Ser Asn Phe Ile Ser Asp Tyr Met Ile Lys Ser Pro 225 230 235 240 Ile Ile Gln Lys Ile Ser Phe Thr Gly Ser Thr Pro Val Gly Lys Lys 245 250 255 Leu Ala Ser Gln Ala Ser Leu Tyr Met Lys Pro Cys Thr Met Glu Leu 260 265 270 Gly Gly His Ala Pro Val Ile Val Cys Asp Asp Ala Asp Ile Asp Ala 275 280 285 Ala Val Glu His Leu Val Gly Tyr Lys Phe Arg Asn Ala Gly Gln Val 290 295 300 Cys Val Ser Pro Thr Arg Phe Tyr Val Gln Glu Gly Ile Tyr Lys Glu 305 310 315 320 Phe Ser Glu Lys Val Val Leu Arg Ala Lys Gln Ile Lys Val Gly Cys 325 330 335 Gly Leu Asp Ala Ser Ser Asp Met Gly Pro Leu Ala Gln Ala Arg Arg 340 345 350 Met His Ala Met Gln Gln Ile Val Glu Asp Ala Val His Lys Gly Ser 355 360 365 Lys Leu Leu Leu Gly Gly Asn Lys Ile Ser Asp Lys Gly Asn Phe Phe 370 375 380 Glu Pro Thr Val Leu Gly Asp Leu Cys Asn Asp Thr Gln Phe Met Asn 385 390 395 400 Asp Glu Pro Phe Gly Pro Ile Ile Gly Leu Ile Pro Phe Asp Thr Ile 405 410 415 Asp His Val Leu Glu Glu Ala Asn Arg Leu Pro Phe Gly Leu Ala Ser 420 425 430 Tyr Ala Phe Thr Thr Ser Ser Lys Asn Ala His Gln Ile Ser Tyr Gly 435 440 445 Leu Glu Ala Gly Met Val Ser Ile Asn His Met Gly Leu Ala Leu Ala 450 455 460 Glu Thr Pro Phe Gly Gly Ile Lys Asp Ser Gly Phe Gly Ser Glu Gly 465 470 475 480 Gly Ile Glu Thr Phe Asp Gly Tyr Leu Arg Thr Lys Phe Ile Thr Gln 485 490 495 Leu Asn 13 942 DNA Acinetobacter sp. 13 atgagcacag acaaagcaaa tacgctgatc aaacccgaag atgtcgtgtt atggattccg 60 ggtaatgtca caattgacag catgaatgcc ggttgggaaa acattgcaat cagagggtac 120 gaatatacca acctcgatgt gcatattcct gccatgcgtg actacatgat cgtcaactat 180 aaaaaaagtg cggcggaaat gcgtagaaaa ggcgatgcct cttgggatac ccaagtggtt 240 aagccgggtt atgtctcctt gttgacctgt ggtgaagatt cccgctgggc gtggaatgac 300 catattgccg tcacccatgt ctacatttcg catgactcca tcacctcaat ggcgaataag 360 gtgtttgatt atgatatcgc ttcgatccga atcagagacg aagtcggtgt ggaagatcat 420 gttttacctg ctctgacttc acttttagaa ctagaattaa agcaaggtgg tttaggtgga 480 aacctgtatt tagagagcat taaaaaccag atcgccctgc atttactccg tcagtatgcc 540 aaattagatt ttaaggaagg acagtgccgt tctggtttta ctcccctaca acgcagactg 600 ttattagaat ttatcaatga aaacatgagc attaaaatta ccctcgaaga tttagcggga 660 ttagtcaaga tgagcgtgcc tcatttaatg agaaaattta aagtcgattt tggtaattcc 720 cctgctgcct acatcatgaa tctcagggtg caatttgcta aacgtttgct cacttcaaaa 780 aaagaaattc cactgaaagt gattgccagt gaagccggtt tttgcgatca gagccatatg 840 acccgagtat ttcaaaaatt ttttgggaaa acacccatcg aaatcagaca ggaacacacc 900 aatctcgtgt ctgaaaattc agtctcctct attgtttttt ga 942 14 313 PRT Acinetobacter sp. 14 Met Ser Thr Asp Lys Ala Asn Thr Leu Ile Lys Pro Glu Asp Val Val 1 5 10 15 Leu Trp Ile Pro Gly Asn Val Thr Ile Asp Ser Met Asn Ala Gly Trp 20 25 30 Glu Asn Ile Ala Ile Arg Gly Tyr Glu Tyr Thr Asn Leu Asp Val His 35 40 45 Ile Pro Ala Met Arg Asp Tyr Met Ile Val Asn Tyr Lys Lys Ser Ala 50 55 60 Ala Glu Met Arg Arg Lys Gly Asp Ala Ser Trp Asp Thr Gln Val Val 65 70 75 80 Lys Pro Gly Tyr Val Ser Leu Leu Thr Cys Gly Glu Asp Ser Arg Trp 85 90 95 Ala Trp Asn Asp His Ile Ala Val Thr His Val Tyr Ile Ser His Asp 100 105 110 Ser Ile Thr Ser Met Ala Asn Lys Val Phe Asp Tyr Asp Ile Ala Ser 115 120 125 Ile Arg Ile Arg Asp Glu Val Gly Val Glu Asp His Val Leu Pro Ala 130 135 140 Leu Thr Ser Leu Leu Glu Leu Glu Leu Lys Gln Gly Gly Leu Gly Gly 145 150 155 160 Asn Leu Tyr Leu Glu Ser Ile Lys Asn Gln Ile Ala Leu His Leu Leu 165 170 175 Arg Gln Tyr Ala Lys Leu Asp Phe Lys Glu Gly Gln Cys Arg Ser Gly 180 185 190 Phe Thr Pro Leu Gln Arg Arg Leu Leu Leu Glu Phe Ile Asn Glu Asn 195 200 205 Met Ser Ile Lys Ile Thr Leu Glu Asp Leu Ala Gly Leu Val Lys Met 210 215 220 Ser Val Pro His Leu Met Arg Lys Phe Lys Val Asp Phe Gly Asn Ser 225 230 235 240 Pro Ala Ala Tyr Ile Met Asn Leu Arg Val Gln Phe Ala Lys Arg Leu 245 250 255 Leu Thr Ser Lys Lys Glu Ile Pro Leu Lys Val Ile Ala Ser Glu Ala 260 265 270 Gly Phe Cys Asp Gln Ser His Met Thr Arg Val Phe Gln Lys Phe Phe 275 280 285 Gly Lys Thr Pro Ile Glu Ile Arg Gln Glu His Thr Asn Leu Val Ser 290 295 300 Glu Asn Ser Val Ser Ser Ile Val Phe 305 310 15 660 DNA Acinetobacter sp. 15 gtgcgctcta tctggcttag acacaatctt gagaatttca aaaagcgatt aaaggcactt 60 gaaattaaag ttgctcaaga aggcattcag ttgaatgatc agcagattgc cgcattagaa 120 cgtaaacatg aagatgatgt tgcttgtggt gaaattgaaa cacatcatcc aggttacctt 180 ggagcacaag atacttttta tgtcggaaat ctaaaaggtg ttgggcatat ttatcagcaa 240 acttttattg atacttatag caaagtggtt cactgcaagc tgtacacaac caagacacca 300 atcacagccg cagatttatt gaatgaccgc gtgttaccat tctatgagtc acaaggattg 360 ccaatgcttc gcattttgac cgacagaggc accgaatatt gcggtaaagt tgaacatcac 420 gattatgagc tttatttggc tctgaatgat attgatcaca ctaaaactaa agcagcatca 480 ccacaaacaa atgggatctg tgagcgcttc cataagacga tcttgcagga gttttatcag 540 attacttttc gaaagaaact ctatagctca ttagaagagt tacagcttga tctagacggt 600 tggctgaaat tctataatac tgaacgaacc catcagggta aggtgtgtaa tggcagatga 660 16 219 PRT Acinetobacter sp. 16 Met Arg Ser Ile Trp Leu Arg His Asn Leu Glu Asn Phe Lys Lys Arg 1 5 10 15 Leu Lys Ala Leu Glu Ile Lys Val Ala Gln Glu Gly Ile Gln Leu Asn 20 25 30 Asp Gln Gln Ile Ala Ala Leu Glu Arg Lys His Glu Asp Asp Val Ala 35 40 45 Cys Gly Glu Ile Glu Thr His His Pro Gly Tyr Leu Gly Ala Gln Asp 50 55 60 Thr Phe Tyr Val Gly Asn Leu Lys Gly Val Gly His Ile Tyr Gln Gln 65 70 75 80 Thr Phe Ile Asp Thr Tyr Ser Lys Val Val His Cys Lys Leu Tyr Thr 85 90 95 Thr Lys Thr Pro Ile Thr Ala Ala Asp Leu Leu Asn Asp Arg Val Leu 100 105 110 Pro Phe Tyr Glu Ser Gln Gly Leu Pro Met Leu Arg Ile Leu Thr Asp 115 120 125 Arg Gly Thr Glu Tyr Cys Gly Lys Val Glu His His Asp Tyr Glu Leu 130 135 140 Tyr Leu Ala Leu Asn Asp Ile Asp His Thr Lys Thr Lys Ala Ala Ser 145 150 155 160 Pro Gln Thr Asn Gly Ile Cys Glu Arg Phe His Lys Thr Ile Leu Gln 165 170 175 Glu Phe Tyr Gln Ile Thr Phe Arg Lys Lys Leu Tyr Ser Ser Leu Glu 180 185 190 Glu Leu Gln Leu Asp Leu Asp Gly Trp Leu Lys Phe Tyr Asn Thr Glu 195 200 205 Arg Thr His Gln Gly Lys Val Cys Asn Gly Arg 210 215 17 975 DNA Acinetobacter sp. 17 atgttttatc ttggtattga tgttgctaaa gctaaaattg attgctgttt aattttagaa 60 aattctgcaa ataaaaagaa aaccaaaact ttttcaaata caccaaaagg ttttgagcaa 120 cttcaaacct ggctaaagca gcatgctgca acttctacgc agaccattat tttaatggaa 180 gcaacatcta tttatcatga actcttggtt aaatatttat ttgatgcggg ctatcaagtc 240 tgtgtaacca atcctgccag agctcgatat tttgctcaga gtatgtctaa gctgaataaa 300 acagacaagg tggatagtga ggtcctagct cgatttgcga tgactgccga tctacatttt 360 tggcaacctt tacctaaaca tattcaattg ctgaatgctt tgctggatag aagagctatt 420 ctttgtgaag atttacaacg tgaaaagaat cgtttggaaa aagcagagtc gaccttcacg 480 atggaacctg tacttcagtc tatccacaag agtattgaac agttaaacaa acacattcag 540 ggtatcgacc agcaaattga tgatcacatt aatcagaatc ctgatttaaa aaatgataaa 600 gaactgctca gcagtattcc agccattgca gatcgaacca gtttattaat gctcagtttc 660 ttgcgcagcc atacttttga aagggctagt caagcggctg cctttgtcgg tttggtcccc 720 attcaaaagc aatcgggtag ttccattcat ggcagaagcc gtttatccaa agcgggctct 780 tccaaaatac gtgctggttt atatatggca gccattgtcg caactcggca taaccctcac 840 atcagggcaa tgaatgaacg tttattggcg aatggtaaaa ccaagatgat agcgattgga 900 gccgcgatga ggaagttgat tcatctttgt tatggtgtgc tcaaacacca acagccttat 960 caagcagatt attga 975 18 324 PRT Acinetobacter sp. 18 Met Phe Tyr Leu Gly Ile Asp Val Ala Lys Ala Lys Ile Asp Cys Cys 1 5 10 15 Leu Ile Leu Glu Asn Ser Ala Asn Lys Lys Lys Thr Lys Thr Phe Ser 20 25 30 Asn Thr Pro Lys Gly Phe Glu Gln Leu Gln Thr Trp Leu Lys Gln His 35 40 45 Ala Ala Thr Ser Thr Gln Thr Ile Ile Leu Met Glu Ala Thr Ser Ile 50 55 60 Tyr His Glu Leu Leu Val Lys Tyr Leu Phe Asp Ala Gly Tyr Gln Val 65 70 75 80 Cys Val Thr Asn Pro Ala Arg Ala Arg Tyr Phe Ala Gln Ser Met Ser 85 90 95 Lys Leu Asn Lys Thr Asp Lys Val Asp Ser Glu Val Leu Ala Arg Phe 100 105 110 Ala Met Thr Ala Asp Leu His Phe Trp Gln Pro Leu Pro Lys His Ile 115 120 125 Gln Leu Leu Asn Ala Leu Leu Asp Arg Arg Ala Ile Leu Cys Glu Asp 130 135 140 Leu Gln Arg Glu Lys Asn Arg Leu Glu Lys Ala Glu Ser Thr Phe Thr 145 150 155 160 Met Glu Pro Val Leu Gln Ser Ile His Lys Ser Ile Glu Gln Leu Asn 165 170 175 Lys His Ile Gln Gly Ile Asp Gln Gln Ile Asp Asp His Ile Asn Gln 180 185 190 Asn Pro Asp Leu Lys Asn Asp Lys Glu Leu Leu Ser Ser Ile Pro Ala 195 200 205 Ile Ala Asp Arg Thr Ser Leu Leu Met Leu Ser Phe Leu Arg Ser His 210 215 220 Thr Phe Glu Arg Ala Ser Gln Ala Ala Ala Phe Val Gly Leu Val Pro 225 230 235 240 Ile Gln Lys Gln Ser Gly Ser Ser Ile His Gly Arg Ser Arg Leu Ser 245 250 255 Lys Ala Gly Ser Ser Lys Ile Arg Ala Gly Leu Tyr Met Ala Ala Ile 260 265 270 Val Ala Thr Arg His Asn Pro His Ile Arg Ala Met Asn Glu Arg Leu 275 280 285 Leu Ala Asn Gly Lys Thr Lys Met Ile Ala Ile Gly Ala Ala Met Arg 290 295 300 Lys Leu Ile His Leu Cys Tyr Gly Val Leu Lys His Gln Gln Pro Tyr 305 310 315 320 Gln Ala Asp Tyr 19 756 DNA Acinetobacter sp. 19 atggaaaaaa ttatgtcaaa taaattcaac aataaagtcg ctttaattac tggcgctggt 60 tcaggtattg gtaaaagcac cgcactgctt ttggctcaac agggtgtaag tgtagtggtt 120 tcagatatta acctggaagc agcacagaaa gttgtggacg aaattgtcgc tttaggcggg 180 aaagcggctg cgaataaggc caatactgct gagcctgaag acatgaaagc tgcagtcgag 240 tttgcggtca gcacttttgg tgcactgcat ttggccttca ataatgcggg aattctgggt 300 gaagttaact ccaccgaaga attgagcatt gaaggatggc gtcgtgtgat tgatgtgaac 360 ttgaatgcgg ttttctacag catgcattat gaagttcctg caatcttggc cgcagggggc 420 ggagcgattg tcaataccgc ttctattgca ggcttgatcg ggattcaaaa tatttcaggc 480 tatgtcgctg caaaacatgg cgtaacgggt ctaacgaaag cggcggcatt ggaatatgca 540 gataaaggga ttcgcattaa ttcagtacat cctggctata tcaaaacgcc tttgattgca 600 gaatttgaag aagcagaaat ggtaaaacta catccgattg gtcgtttggg acagccggaa 660 gaagttgctc aggttgttgc cttcctactt tctgatgatg cttcatttgt gaccggtagt 720 cagtatgtgg tcgatggtgc atatacctcg aaataa 756 20 251 PRT Acinetobacter sp. 20 Met Glu Lys Ile Met Ser Asn Lys Phe Asn Asn Lys Val Ala Leu Ile 1 5 10 15 Thr Gly Ala Gly Ser Gly Ile Gly Lys Ser Thr Ala Leu Leu Leu Ala 20 25 30 Gln Gln Gly Val Ser Val Val Val Ser Asp Ile Asn Leu Glu Ala Ala 35 40 45 Gln Lys Val Val Asp Glu Ile Val Ala Leu Gly Gly Lys Ala Ala Ala 50 55 60 Asn Lys Ala Asn Thr Ala Glu Pro Glu Asp Met Lys Ala Ala Val Glu 65 70 75 80 Phe Ala Val Ser Thr Phe Gly Ala Leu His Leu Ala Phe Asn Asn Ala 85 90 95 Gly Ile Leu Gly Glu Val Asn Ser Thr Glu Glu Leu Ser Ile Glu Gly 100 105 110 Trp Arg Arg Val Ile Asp Val Asn Leu Asn Ala Val Phe Tyr Ser Met 115 120 125 His Tyr Glu Val Pro Ala Ile Leu Ala Ala Gly Gly Gly Ala Ile Val 130 135 140 Asn Thr Ala Ser Ile Ala Gly Leu Ile Gly Ile Gln Asn Ile Ser Gly 145 150 155 160 Tyr Val Ala Ala Lys His Gly Val Thr Gly Leu Thr Lys Ala Ala Ala 165 170 175 Leu Glu Tyr Ala Asp Lys Gly Ile Arg Ile Asn Ser Val His Pro Gly 180 185 190 Tyr Ile Lys Thr Pro Leu Ile Ala Glu Phe Glu Glu Ala Glu Met Val 195 200 205 Lys Leu His Pro Ile Gly Arg Leu Gly Gln Pro Glu Glu Val Ala Gln 210 215 220 Val Val Ala Phe Leu Leu Ser Asp Asp Ala Ser Phe Val Thr Gly Ser 225 230 235 240 Gln Tyr Val Val Asp Gly Ala Tyr Thr Ser Lys 245 250 21 900 DNA Acinetobacter sp. 21 atgagtcaaa acaacggaga gttaaaaatg aaacaaatga aaaactattt ctatcatcgt 60 tcaaatcaaa aaatagctgc tttggtcttt gctttaactg ccgctttgga cctgcaagcc 120 gcaggggtga gttctgatgc cggggattat caagcacttc cagggggaac caacttagcg 180 gttgcctatt accagcatac ggaagcggat aaggcgtatg caaatggtga taaagtcgct 240 gatgatctcg atttaagcat tgatttggga atattgcgtt acgttcgttt tattgaagta 300 ggggattgga ttgtagatcc tcaattcctc ttgccttttg ccaagcaaaa gatgaatggc 360 gctgatgata tctcgggtgt cggtgattta attgtgggtg gtatcgcctg gccattgcat 420 gatgctgaaa aagggcgcta ttttggtttc ggtggttttt tgaccgtacc taccggcagt 480 aatgaaacga agggttttgc catcagtaat gatcgctatc aatataatgt tcaggccggt 540 tattaccatg ctttaactga taaatttgcg cttgaggggg tggggcagtt tgaactttat 600 agcgagcaaa aatataccaa cattgagaaa gaggtttttt tccagacaga tttctccgca 660 ctctataaag tgaccgataa atccaatttg gctgtcacct ggagacatac cgatggcggt 720 aaagaaaagg tgaatggtgt cactgaacgt ggcagtgata gaaaagatac ctttgtcgtt 780 tctgcttcta ccaatatcaa gccgaatctg cagctattat tacaatggcg acaagatgtg 840 aatgttgaaa atggcttgga aatttctgga cttcagtcac gtttactgta tgccttctaa 900 22 299 PRT Acinetobacter sp. 22 Met Ser Gln Asn Asn Gly Glu Leu Lys Met Lys Gln Met Lys Asn Tyr 1 5 10 15 Phe Tyr His Arg Ser Asn Gln Lys Ile Ala Ala Leu Val Phe Ala Leu 20 25 30 Thr Ala Ala Leu Asp Leu Gln Ala Ala Gly Val Ser Ser Asp Ala Gly 35 40 45 Asp Tyr Gln Ala Leu Pro Gly Gly Thr Asn Leu Ala Val Ala Tyr Tyr 50 55 60 Gln His Thr Glu Ala Asp Lys Ala Tyr Ala Asn Gly Asp Lys Val Ala 65 70 75 80 Asp Asp Leu Asp Leu Ser Ile Asp Leu Gly Ile Leu Arg Tyr Val Arg 85 90 95 Phe Ile Glu Val Gly Asp Trp Ile Val Asp Pro Gln Phe Leu Leu Pro 100 105 110 Phe Ala Lys Gln Lys Met Asn Gly Ala Asp Asp Ile Ser Gly Val Gly 115 120 125 Asp Leu Ile Val Gly Gly Ile Ala Trp Pro Leu His Asp Ala Glu Lys 130 135 140 Gly Arg Tyr Phe Gly Phe Gly Gly Phe Leu Thr Val Pro Thr Gly Ser 145 150 155 160 Asn Glu Thr Lys Gly Phe Ala Ile Ser Asn Asp Arg Tyr Gln Tyr Asn 165 170 175 Val Gln Ala Gly Tyr Tyr His Ala Leu Thr Asp Lys Phe Ala Leu Glu 180 185 190 Gly Val Gly Gln Phe Glu Leu Tyr Ser Glu Gln Lys Tyr Thr Asn Ile 195 200 205 Glu Lys Glu Val Phe Phe Gln Thr Asp Phe Ser Ala Leu Tyr Lys Val 210 215 220 Thr Asp Lys Ser Asn Leu Ala Val Thr Trp Arg His Thr Asp Gly Gly 225 230 235 240 Lys Glu Lys Val Asn Gly Val Thr Glu Arg Gly Ser Asp Arg Lys Asp 245 250 255 Thr Phe Val Val Ser Ala Ser Thr Asn Ile Lys Pro Asn Leu Gln Leu 260 265 270 Leu Leu Gln Trp Arg Gln Asp Val Asn Val Glu Asn Gly Leu Glu Ile 275 280 285 Ser Gly Leu Gln Ser Arg Leu Leu Tyr Ala Phe 290 295 23 1059 DNA Acinetobacter sp. 23 atgcactgtt actgcgtgac gcatcatgga caaccactcg aagacgttga gaaagaaatt 60 ccgcaaccga aaggtactga agttttactc catgtaaaag ccgcaggtct atgccatacg 120 gatttacact tatgggaagg ttattatgat ctaggtgggg gcaagcgttt atcccttgca 180 gatcgtgggc tgaagccacc cttaacctta agtcatgaaa ttacaggtca ggtggttgct 240 gtcggtccag atgcggaatc agtcaaggtc ggcatggtca gcttggttca tccatggatt 300 ggttgcggtg aatgcaacta ctgtaaacgt ggcgaagaaa acctgtgtgc caaaccgcaa 360 cagttaggca tcgccaagcc gggtggtttt gccgaatata tcatcgtgcc gcatccacga 420 tatctggtgg atattgcagg tctggatctg gctgaagctg cacctttggc atgtgcaggc 480 gtgacaacat acagtgcact gaaaaaattc ggtgatttga ttcaaagcga gccggtggtg 540 atcattggtg ccggtggttt agggctgatg gcactcgagt tgctcaaagc tatgcaagcc 600 aaaggcgcaa tcgtagttga tattgatgac agcaaactgg aagcagcacg tgctgccggt 660 gcattatcgg tcatcaatag ccgaagtgag gatgctgctc aacagctgat tcaggcaact 720 gacggtggtg cacgtctgat ccttgatctg gttggcagta atccaacatt gagccttgcc 780 ttggcgagtg ctgcacgtgg tgggcatatt gtgatctgcg gattgatggg gggagaaatt 840 aagctttcca ttccggtgat tccaatgaga ccactcacaa tccagggcag ttatgtaggg 900 acggtagagg aattaagaga gctggtggag ctggtgaaag aaacccacat gtcagccatt 960 cccgtgaaaa aactgccaat ttcgcagatc aattccgcat ttggagactt gaaagatggc 1020 aacgtcatcg ggcgtattgt gcttatgcac gaaaactga 1059 24 352 PRT Acinetobacter sp. 24 Met His Cys Tyr Cys Val Thr His His Gly Gln Pro Leu Glu Asp Val 1 5 10 15 Glu Lys Glu Ile Pro Gln Pro Lys Gly Thr Glu Val Leu Leu His Val 20 25 30 Lys Ala Ala Gly Leu Cys His Thr Asp Leu His Leu Trp Glu Gly Tyr 35 40 45 Tyr Asp Leu Gly Gly Gly Lys Arg Leu Ser Leu Ala Asp Arg Gly Leu 50 55 60 Lys Pro Pro Leu Thr Leu Ser His Glu Ile Thr Gly Gln Val Val Ala 65 70 75 80 Val Gly Pro Asp Ala Glu Ser Val Lys Val Gly Met Val Ser Leu Val 85 90 95 His Pro Trp Ile Gly Cys Gly Glu Cys Asn Tyr Cys Lys Arg Gly Glu 100 105 110 Glu Asn Leu Cys Ala Lys Pro Gln Gln Leu Gly Ile Ala Lys Pro Gly 115 120 125 Gly Phe Ala Glu Tyr Ile Ile Val Pro His Pro Arg Tyr Leu Val Asp 130 135 140 Ile Ala Gly Leu Asp Leu Ala Glu Ala Ala Pro Leu Ala Cys Ala Gly 145 150 155 160 Val Thr Thr Tyr Ser Ala Leu Lys Lys Phe Gly Asp Leu Ile Gln Ser 165 170 175 Glu Pro Val Val Ile Ile Gly Ala Gly Gly Leu Gly Leu Met Ala Leu 180 185 190 Glu Leu Leu Lys Ala Met Gln Ala Lys Gly Ala Ile Val Val Asp Ile 195 200 205 Asp Asp Ser Lys Leu Glu Ala Ala Arg Ala Ala Gly Ala Leu Ser Val 210 215 220 Ile Asn Ser Arg Ser Glu Asp Ala Ala Gln Gln Leu Ile Gln Ala Thr 225 230 235 240 Asp Gly Gly Ala Arg Leu Ile Leu Asp Leu Val Gly Ser Asn Pro Thr 245 250 255 Leu Ser Leu Ala Leu Ala Ser Ala Ala Arg Gly Gly His Ile Val Ile 260 265 270 Cys Gly Leu Met Gly Gly Glu Ile Lys Leu Ser Ile Pro Val Ile Pro 275 280 285 Met Arg Pro Leu Thr Ile Gln Gly Ser Tyr Val Gly Thr Val Glu Glu 290 295 300 Leu Arg Glu Leu Val Glu Leu Val Lys Glu Thr His Met Ser Ala Ile 305 310 315 320 Pro Val Lys Lys Leu Pro Ile Ser Gln Ile Asn Ser Ala Phe Gly Asp 325 330 335 Leu Lys Asp Gly Asn Val Ile Gly Arg Ile Val Leu Met His Glu Asn 340 345 350 25 903 DNA Acinetobacter sp. 25 atgaatagca cacaaagcaa tactcaattt cttttcgatt tatatgcgaa ctggtcaaga 60 cggatgcagg aaaatccgaa tatgaccatt gaagactttc gcagtatgtt tgatgaatgg 120 catcaaccta cattggaacc ggaagaagtg tcttataaat tcgatgttgt ggcaggtgta 180 gaaggtcttt ggatttatcc gaaagatgct gacttatcca aagtcatcat ttatacccat 240 ggcggtggat ttgcggtcgg ttcttcggcc agtcaccgta agctggtggg gcatttggcc 300 aagtatttag gggtatccgc atttgtggtt gattaccgac gttcaccaga acatgtcttc 360 ccggcacaaa ttcaggacgt gacagcagta tataaagaac tactccagcg tggctttact 420 gcaaaaaata tgctgaccgc aggggattct gcggggggga atctggcgat atcaaccgta 480 ctcaatctac gaaatgaagg gattgagttg ccaggagcag tgattgcatt ctctccttgg 540 ctggatatgg agcacaaagg tgaaaccctg atcagcaacg atgccactga tgccttgatt 600 acagtggatc tgcttaaagg catgtcacaa atgttcttgg gtgaacatgg tgatccggca 660 aatccattgg cgaatccgtt aaaagccaat tatcaggttt tcccacgttt gtatatcaat 720 gccggatcag ttgaatcact tgtagacaat gcaacacgtc ttgctgatat tgcaaaaaaa 780 gagggtgttg atgtgacttt atctgtggtg gacaacatgc agcacgtttt tcctttccta 840 gctgggcgtg caagtgaagc tgatcaagaa ttagcgaaaa ttgcgcagtg gtttaaagca 900 taa 903 26 300 PRT Acinetobacter sp. 26 Met Asn Ser Thr Gln Ser Asn Thr Gln Phe Leu Phe Asp Leu Tyr Ala 1 5 10 15 Asn Trp Ser Arg Arg Met Gln Glu Asn Pro Asn Met Thr Ile Glu Asp 20 25 30 Phe Arg Ser Met Phe Asp Glu Trp His Gln Pro Thr Leu Glu Pro Glu 35 40 45 Glu Val Ser Tyr Lys Phe Asp Val Val Ala Gly Val Glu Gly Leu Trp 50 55 60 Ile Tyr Pro Lys Asp Ala Asp Leu Ser Lys Val Ile Ile Tyr Thr His 65 70 75 80 Gly Gly Gly Phe Ala Val Gly Ser Ser Ala Ser His Arg Lys Leu Val 85 90 95 Gly His Leu Ala Lys Tyr Leu Gly Val Ser Ala Phe Val Val Asp Tyr 100 105 110 Arg Arg Ser Pro Glu His Val Phe Pro Ala Gln Ile Gln Asp Val Thr 115 120 125 Ala Val Tyr Lys Glu Leu Leu Gln Arg Gly Phe Thr Ala Lys Asn Met 130 135 140 Leu Thr Ala Gly Asp Ser Ala Gly Gly Asn Leu Ala Ile Ser Thr Val 145 150 155 160 Leu Asn Leu Arg Asn Glu Gly Ile Glu Leu Pro Gly Ala Val Ile Ala 165 170 175 Phe Ser Pro Trp Leu Asp Met Glu His Lys Gly Glu Thr Leu Ile Ser 180 185 190 Asn Asp Ala Thr Asp Ala Leu Ile Thr Val Asp Leu Leu Lys Gly Met 195 200 205 Ser Gln Met Phe Leu Gly Glu His Gly Asp Pro Ala Asn Pro Leu Ala 210 215 220 Asn Pro Leu Lys Ala Asn Tyr Gln Val Phe Pro Arg Leu Tyr Ile Asn 225 230 235 240 Ala Gly Ser Val Glu Ser Leu Val Asp Asn Ala Thr Arg Leu Ala Asp 245 250 255 Ile Ala Lys Lys Glu Gly Val Asp Val Thr Leu Ser Val Val Asp Asn 260 265 270 Met Gln His Val Phe Pro Phe Leu Ala Gly Arg Ala Ser Glu Ala Asp 275 280 285 Gln Glu Leu Ala Lys Ile Ala Gln Trp Phe Lys Ala 290 295 300 27 17417 DNA Acinetobacter sp. 27 ctagcattta cgcgtgaggt aggtgggtag gtctgtaatg tgaagatcta cgaggaaatc 60 ggcgtcatga cgtgaggtcc agcgaaccgt cttgcgtaat ccgtcattca tggtgagtaa 120 cattgcccgt atttcgcgtt cagtatatag cagaccagca tgattaacga gatcctgggt 180 attttagtcc ggacacccaa agtcccatgc ggtcgccaga tccagtaagt cgactacgac 240 ttgctcatct gtagccaacc ccgcaatcac ttccacaatt ttcatcagtg gaaccggatt 300 gaagaaatgg aaacctgcga tacggccctg atgctgacac gcagatgcaa ttgaggtcac 360 agatagtgag gatgtatttg aaaccagaat agtttcttca gccacaatcc tttcaagctg 420 tttaaacaaa gtttgcttga tttccagatt ttcaataatt gcttctacga ccagatcaac 480 gccagcaacc tcttcaatgc tttccaagat aatcaatcgg gctaaggtat ccacaagctg 540 ctgttcggtt aactttcctt tagcagctag tttgtgcaag gttactttta atttttccaa 600 gccttgctca gcagcgccgg gtttagcatc aaataaacgg acctcaacac ccgcctgtgc 660 tgcaatttgc gcaataccca ttcccattac gcctgtgcca atcaaggcca ttttttgaat 720 cgtcatgact tattttcctt gatattgagg gcttcgcttt tcgaaaaagg cattgacgcc 780 ttctttttga tcttgtgtat caaataaaat ttggaaggct ttacgctcta atgccaaagc 840 accatcgagt ggcatattgg cacctagtgt tgtgacttct ttgatctgtt caacggcaat 900 cggtgagagt tgggcaatct gtgtcgcaat ttcaaccgct ttagcaaggg tttgatcatc 960 ctcaaccact tcggaaacca accccatttt gtcagcttct tctgcagaaa agatctttcc 1020 tgttaacact atttgcatgg ctttaaactt ccctaccgca cgcagtaagc gttgggtacc 1080 accagcacct ggcatcagcc ccaatttgac ttcaggctga ccaaactggg ctgattttcc 1140 ggcaataatg atgtctgcat gcattgcaag ttcacaccca ccacccaatg catatccatt 1200 cacagcagcc acaatcggtt tagggcaatc aataatggcc cgccagtact gttccgtatg 1260 gcgtaaatac atgtctacgg tttttgcagt ggtgaagtcc cggatatccg cacctgctgc 1320 aaatactttt tcaccaccag taatgacaat tgcgcggact gtatcagatg cagcgagctg 1380 ctcaaacatt gctgcgagct gttggcgcag ttccagattc aatgcatttc tagtatctgg 1440 acgatgtagt tcaacaatgg ccacaccatt actttgaata tctaaattca atatttcatt 1500 ttccataaca acctacatgt ttcgcatagc ggtttattta aaccaaatat acctgttttt 1560 ttgcaacaat aaagcccaca ggaacatagt tttaaattaa aaattggcta aaaatattta 1620 aaaaacacaa ataaaatacc gcacagcggt atttgatatc aatattattg catttatttt 1680 tccattctgt catattattt tcattccaaa gcattagatc acccctgcat gaagcagaga 1740 tggctaaatt tacctatcta atacaagggc ttaaaaatga ttcgcgatca agacacatta 1800 aatcagctgg ttgacatgat ccgtcagttt gtcgatggcg ttcttattcc caatgaagaa 1860 attgttgcgg aaaccgatga aattccagct gaaatcgtgc agcaaatgaa agaactgggt 1920 ctttttggtc tcaccattcc tgaggaatat gagggtcttg gcctgaccat ggaggaagag 1980 gtttacattg catttgaact gggacgtacc tctcctgctt tccgttcact gatcggcact 2040 aacaatggga tcggttcatc aggcttaatt attgatggct ccgaagagca gaaacagtat 2100 tttttgccac gtctggcaag tggtgaaatt attggttcat tctgtttaac tgaacctgat 2160 tccggttcag atgctgcctc tttaaaaacc acagcggtga aagatggtga tcattacatt 2220 ttaaatggca ctaagcgtta catcaccaat gcaccgcatg cgggtgtctt tactgtcatg 2280 gcacgtacca gtaccgaaat taaaggtaca ggtggaattt cagcctttat cgtggacagt 2340 aaaactcctg gtatttcctt gggtaaacgt gataagaaga tgggccaaaa aggtgcacat 2400 acctgtgatg tgatttttga aaactgtcgt attcctgcat ctgcactcat tggtggtgtt 2460 gaaggtgtag gttttaaaac tgcaatgaag gtacttgata aaggccgtat tcatattgct 2520 gcattaagtg taggtgctgc tacgcgtatg ctggaagatt ccctacaata tgccgttgag 2580 cgcaaacagt ttggtcaagc gattgcgaac ttccagttga ttcaaggtat gttagccgat 2640 tctaaagctg aaatttacgc agcaaaatgt atggtattag atgctgcccg acttcgtgat 2700 gctggacaga atgtcagcac ggaagcatct tgtgccaaga tgtttgccac tgaaatgtgt 2760 ggccgtgtcg cagatcgtgg cgtacagatc catggtggtg cgggttatat cagtgaatat 2820 gctattgagc gtttttaccg tgatgtacgt ttattccgtt tgtatgaagg tacaacgcaa 2880 atccaacagg tcattattgc ccgcaatatg atccgtgaag cgactcaata attgtataac 2940 aggtattgag tgtatctaaa aggacgggat tagtgattta agctataact tgaatactaa 3000 tcctgacttt ttgatggcaa ggctataaaa cctcctagct cattttatct ctaagctaat 3060 cacagctgaa agatattttc agtcttcatc cttaccagac agttcacaat acaaaattgg 3120 attttatgaa tatgcaagaa caagaaatcg aacgcgaatc aatggagttt gacgtcgtga 3180 ttgtcggcgc aggaccggcc ggtctttctg cagcgatcaa gatccgtcaa cttgcaattg 3240 aaaacaacct gaacgatctg tcggtttgtg tggtggaaaa aggctctgaa gtcggtgcgc 3300 acatcttgtc cggtgcggta ctggaaccac gtgccatgaa tgagctgttc ccgaactgga 3360 aggaagaagg tgcaccttta aatgttccag tgaccgaaga caagacctat ttcctgctct 3420 cggatgaaaa atcacaagaa gcgccacact ggatggtgcc taaaaccatg cataacgatg 3480 gcaactatgt tatctcgctc ggcaacgtag tgcgctggtt gggtcaaaaa gcggaagagc 3540 tggaagtatc tattttcccg ggctttgccg ctgctgaaat tctgtaccat gcagatggtt 3600 cggtgaaagg cattcaaacc ggtgacatgg gcattggcaa ggatggcgaa ccgacccata 3660 actttactcc gggctatgaa ctgcatgcca aatacaccct gtttgctgaa ggctgccgtg 3720 gccacctcgg caagcgttta attgccaaat acaacctcga taaagattca gatccacaac 3780 attacggtat cggtatcaaa gagctgtggg aaatcgaccc ggcgaaacac aagccaggtc 3840 tggtgatgca cggtgccggc tggccattgt ctgaaaccgg ttcttcaggc ggctggtggt 3900 tgtatcatgc ggaaaacaat caggtgactt tgggcatgat cgtcgatctg tcttacacca 3960 acccgcatat gtatccgttt atggaaatgc agcgctggaa aacccatccg ctgatcaagc 4020 agtatctgga aggtggcaaa cgtatttctt atggcgcgcg tgcggtaacc aaaggcggct 4080 ttaactcgct accgaaattt accttcccgg gcggatcgct gattggtgac gatgccggct 4140 tcctgaactt tgccaaaatc aagggctcac ataccgcgat gaaatccggc atgctctgcg 4200 gtgaagcagt gtttgaagcc attgctgccg gtgtggaaaa aggtggtgac cttgcggttg 4260 cgcgtgtgac ggaaggcgaa gacttgtttg ccaaaaaact gacttcttac accgacaagt 4320 tcaataatag ctggctgaaa gaagagctgt acaactcgcg taactttggc ccggccatgc 4380 acaagtttgg tcagtggctc ggtggtgcgt ttaactttat cgaccagaac gtgtttaagg 4440 tgccgtttac cctgcatgac ctggtgacgg atttcggtgc gctgaaaacc gtcgatgcgg 4500 tgaacttcaa gccgaattat ccaaaaccgg atggcaaact gacctttgac cgtctgtctt 4560 cggtgtttgt atccaacacg gtgcatgaag aaaaccagcc agcgcattta aaactgactg 4620 acacttcgat tccggtgaat gtcaacctgc caaaatggga tgaaccggcg cagcgctact 4680 gccccgcggg tgtatacgaa atcatggaaa atgatgacgg ttcgaaacgc ttccagatca 4740 atgcagccaa ctgtgtgcac tgcaagacct gtgacatcaa ggatccttca cagaacatca 4800 cctgggtaac accggaaggt ggtggtggtc caaactatcc gaatatgtaa gtctaatcac 4860 ttcaaggaag aggtttccca tttcccttct ttctagcaga tgaagaagct tgcaactaaa 4920 agagattgtt tggatcagtt acccaaaatc gttgaaaaga ttttaactct tcgattttta 4980 ttttttaggt aatcctagcc ctctcggggg ctaggattaa aaattttaag ttattccaac 5040 acgaatgaca aattgttcaa tgcaaaataa aaacatacaa tatataaata tattttttaa 5100 ttaaaacata agattacaat aaaataagaa tttttatttg gagtttgttt tttttctaca 5160 atgatcatta tgtacaattt ttaggttcac cccatccaag ccttgtgatt gcattcctgc 5220 gattctttat tcaatgaata agcaatgcta ttaatcagca atgaataacc agcactgcag 5280 attttgaata aattcacatg tcgtaatgga gattatcatg tcacaaaaaa tggattttga 5340 tgctatcgtg attggtggtg gttttggcgg actttatgca gtcaaaaaat taagagacga 5400 gctcgaactt aaggttcagg cttttgataa agccacggat gtcgcaggta cttggtactg 5460 gaaccgttac ccaggtgcat tgtcggatac agaaacccac ctctactgct attcttggga 5520 taaagaatta ctacaatcgc tagaaatcaa gaaaaaatat gtgcaaggcc ctgatgtacg 5580 caagtattta cagcaagtgg ctgaaaagca tgatttaaag aagagctatc aattcaatac 5640 cgcggttcaa tcggctcatt acaacgaagc agatgccttg tgggaagtca ccactgaata 5700 tggtgataag tacacggcgc gtttcctcat cactgcttta ggcttattgt ctgcgcctaa 5760 cttgccaaac atcaaaggca ttaatcagtt taaaggtgag ctgcatcata ccagccgctg 5820 gccagatgac gtaagttttg aaggtaaacg tgtcggcgtg attggtacgg gttccaccgg 5880 tgttcaggtt attacggctg tggcacctct ggctaaacac ctcactgtct tccagcgttc 5940 tgcacaatac agcgttccaa ttggcaatga tccactgtct gaagaagatg ttaaaaagat 6000 caaagacaat tatgacaaaa tttgggatgg tgtatggaat tcagcccttg cctttggcct 6060 gaatgaaagc acagtgccag caatgagcgt atcagctgaa gaacgcaagg cagtttttga 6120 aaaggcatgg caaacaggtg gcggtttccg tttcatgttt gaaactttcg gtgatattgc 6180 caccaatatg gaagccaata tcgaagcgca aaatttcatt aagggtaaaa ttgctgaaat 6240 cgtcaaagat ccagccattg cacagaagct tatgccacag gatttgtatg caaaacgtcc 6300 gttgtgtgac agtggttact acaacacctt taaccgtgac aatgtccgtt tagaagatgt 6360 gaaagccaat ccgattgttg aaattaccga aaacggtgtg aaactcgaaa atggcgattt 6420 cgttgaatta gacatgctga tatgtgccac aggttttgat gccgtcgatg gcaactatgt 6480 gcgcatggac attcaaggta aaaacggctt ggccatgaaa gactactgga aagaaggtcc 6540 gtcgagctat atgggtgtca ccgtaaataa ctatccaaac atgttcatgg tgcttggacc 6600 gaatggcccg tttaccaacc tgccgccatc aattgaatca caggtggaat ggatcagtga 6660 taccattcaa tacacggttg aaaacaatgt tgaatccatt gaagcgacaa aagaagcgga 6720 agaacaatgg actcaaactt gcgccaatat tgcggaaatg accttattcc ctaaagcgca 6780 atcctggatt tttggtgcga atatcccggg caagaaaaac acggtttact tctatctcgg 6840 tggtttaaaa gaatatcgca gtgcgctagc caactgcaaa aaccatgcct atgaaggttt 6900 tgatattcaa ttacaacgtt cagatatcaa gcaacctgcc aatgcctaaa tatatggggg 6960 gcatccccca tattccattt tgtttaacat cagtcatatg ccagggatgt cttatcatga 7020 actatccaaa tataccttta tatatcaacg gtgagtttct agatcatacc aatagagacg 7080 tcaaagaagt ttttaatcca gtgaaccatg aatgtattgg actcatggcc tgtgcatcac 7140 aagcagacct ggactacgca cttgaaagtt cacaacaggc ttttctaagg tggaaaaaaa 7200 cttctcctat cacccgtagt gaaatcctca gaacctttgc gaaactagcg cgtgaaaaag 7260 cagcagaaat cgggcgcaat attacccttg atcaaggtaa gcccctgaaa gaagccattg 7320 cagaagtcac tgtctgtgca gaacatgcag aatggcatgc agaagaatgc cgacgcattt 7380 atggccgtgt tattccaccg cgtaacccaa atgtacagca actagtagtc agagaaccgc 7440 tgggcgtatg tctggcattt tcaccgtgga atttcccgtt taatcaggca attcgtaaaa 7500 tttctgctgc aattgctgcc ggctgcacca tcattgtgaa aggttctggc gacacaccaa 7560 gcgcggtata tgcgattgcc cagctatttc atgaggcggg tttgccgaat ggtgtgctga 7620 atgtgatttg gggtgactca aacttcattt ctgattacat gatcaaatcg ccgatcatcc 7680 aaaagatttc attcacaggc tcaaccccgg tgggtaaaaa attagcctcg caagcgagtc 7740 tgtatatgaa gccttgcacc atggaattgg gtggtcatgc accggtcatc gtctgtgatg 7800 atgctgatat tgatgccgct gttgaacatc tggtcggtta taaattccgt aatgcaggac 7860 aggtctgtgt atcaccaacc cgtttttatg tgcaggaagg tatttataag gaattttctg 7920 agaaagtggt gttaagagcc aaacagatca aagtgggttg tggcttagac gcatcctcag 7980 atatgggacc attggctcaa gctcgccgca tgcatgcaat gcaacaaatt gttgaagatg 8040 cggttcataa aggctcaaaa ttactgcttg gcggaaataa aatttctgac aaaggcaatt 8100 tttttgaacc aacggtactc ggtgacttgt gcaatgacac ccagtttatg aatgacgagc 8160 catttggtcc gatcattggt ttgatacctt ttgacacaat agaccatgtc ctggaagaag 8220 caaatcgatt accatttgga ttagcctctt acgcttttac cacatccagc aaaaatgcgc 8280 atcaaatctc atacggactg gaggctggca tggtttcgat taaccacatg ggattggcgc 8340 tcgctgaaac accttttggt ggtattaagg atagcggttt tggtagtgaa gggggtatcg 8400 aaacctttga cggttacctc agaaccaaat ttattacgca actcaattag aaatggatct 8460 tggtgtgcgt aggcacacca attctctttt gactttaagg atgaaagtta aatgagcaca 8520 gacaaagcaa atacgctgat caaacccgaa gatgtcgtgt tatggattcc gggtaatgtc 8580 acaattgaca gcatgaatgc cggttgggaa aacattgcaa tcagagggta cgaatatacc 8640 aacctcgatg tgcatattcc tgccatgcgt gactacatga tcgtcaacta taaaaaaagt 8700 gcggcggaaa tgcgtagaaa aggcgatgcc tcttgggata cccaagtggt taagccgggt 8760 tatgtctcct tgttgacctg tggtgaagat tcccgctggg cgtggaatga ccatattgcc 8820 gtcacccatg tctacatttc gcatgactcc atcacctcaa tggcgaataa ggtgtttgat 8880 tatgatatcg cttcgatccg aatcagagac gaagtcggtg tggaagatca tgttttacct 8940 gctctgactt cacttttaga actagaatta aagcaaggtg gtttaggtgg aaacctgtat 9000 ttagagagca ttaaaaacca gatcgccctg catttactcc gtcagtatgc caaattagat 9060 tttaaggaag gacagtgccg ttctggtttt actcccctac aacgcagact gttattagaa 9120 tttatcaatg aaaacatgag cattaaaatt accctcgaag atttagcggg attagtcaag 9180 atgagcgtgc ctcatttaat gagaaaattt aaagtcgatt ttggtaattc ccctgctgcc 9240 tacatcatga atctcagggt gcaatttgct aaacgtttgc tcacttcaaa aaaagaaatt 9300 ccactgaaag tgattgccag tgaagccggt ttttgcgatc agagccatat gacccgagta 9360 tttcaaaaat tttttgggaa aacacccatc gaaatcagac aggaacacac caatctcgtg 9420 tctgaaaatt cagtctcctc tattgttttt tgagtactaa gagccacgca agaacctgat 9480 tttcaataaa gcatccactg aaaaccagtg tggacttaca tgcattattt atgcaaaata 9540 acaaatgtca tgtgagtatc aagatatact ttctatcgct atcaagaact tgccagtaca 9600 ggcaatatgg atgcactcat caaccagagt cgcagaactc caaatttaaa aaaccgagtg 9660 gatgagcaaa ctgaataagc tgttgttgat tttgcaatcc aatatccagc ttatggtcag 9720 catcggacca gtaatgagct acgtcagatt ggcatcttcg tatctggcag cggtgtgcgc 9780 tctatctggc ttagacacaa tcttgagaat ttcaaaaagc gattaaaggc acttgaaatt 9840 aaagttgctc aagaaggcat tcagttgaat gatcagcaga ttgccgcatt agaacgtaaa 9900 catgaagatg atgttgcttg tggtgaaatt gaaacacatc atccaggtta ccttggagca 9960 caagatactt tttatgtcgg aaatctaaaa ggtgttgggc atatttatca gcaaactttt 10020 attgatactt atagcaaagt ggttcactgc aagctgtaca caaccaagac accaatcaca 10080 gccgcagatt tattgaatga ccgcgtgtta ccattctatg agtcacaagg attgccaatg 10140 cttcgcattt tgaccgacag aggcaccgaa tattgcggta aagttgaaca tcacgattat 10200 gagctttatt tggctctgaa tgatattgat cacactaaaa ctaaagcagc atcaccacaa 10260 acaaatggga tctgtgagcg cttccataag acgatcttgc aggagtttta tcagattact 10320 tttcgaaaga aactctatag ctcattagaa gagttacagc ttgatctaga cggttggctg 10380 aaattctata atactgaacg aacccatcag ggtaaggtgt gtaatggcag atgagcagca 10440 ttgctgcgca agattgcaac attacttgat ggaaaacgta tttgggctga aaagaattta 10500 gttcaaattt aacctgacag tcttaagcaa atatcggtaa ctatcagatc aggtttgaga 10560 taccgtctga aacgtcaagt aaatgattga gaattcatgc tcaataatct gcttgataag 10620 gctgttggtg tttgagcaca ccataacaaa gatgaatcaa cttcctcatc gcggctccaa 10680 tcgctatcat cttggtttta ccattcgcca ataaacgttc attcattgcc ctgatgtgag 10740 ggttatgccg agttgcgaca atggctgcca tatataaacc agcacgtatt ttggaagagc 10800 ccgctttgga taaacggctt ctgccatgaa tggaactacc cgattgcttt tgaatgggga 10860 ccaaaccgac aaaggcagcc gcttgactag ccctttcaaa agtatggctg cgcaagaaac 10920 tgagcattaa taaactggtt cgatctgcaa tggctggaat actgctgagc agttctttat 10980 cattttttaa atcaggattc tgattaatgt gatcatcaat ttgctggtcg ataccctgaa 11040 tgtgtttgtt taactgttca atactcttgt ggatagactg aagtacaggt tccatcgtga 11100 aggtcgactc tgctttttcc aaacgattct tttcacgttg taaatcttca caaagaatag 11160 ctcttctatc cagcaaagca ttcagcaatt gaatatgttt aggtaaaggt tgccaaaaat 11220 gtagatcggc agtcatcgca aatcgagcta ggacctcact atccaccttg tctgttttat 11280 tcagcttaga catactctga gcaaaatatc gagctctggc aggattggtt acacagactt 11340 gatagcccgc atcaaataaa tatttaacca agagttcatg ataaatagat gttgcttcca 11400 ttaaaataat ggtctgcgta gaagttgcag catgctgctt tagccaggtt tgaagttgct 11460 caaaaccttt tggtgtattt gaaaaagttt tggttttctt tttatttgca gaattttcta 11520 aaattaaaca gcaatcaatt ttagctttag caacatcaat accaagataa aacataatct 11580 ttacctgctt tatttatcca attattgttt tagcataacc accgtctttt cttgtgaatg 11640 cagcatcaaa gtgcttgtta ccgtccagag ttgtgcaagt ggttagggca aattacaggt 11700 tttatctcaa actctaactt tatgttttgc tagtacacga aactctgcaa tttgcaatat 11760 agtgatagct aatcactatg aatggtaaga tacaagctag tacacataag aagatattac 11820 ttcttctcag gcagattcgc agcaaagaaa aattttccct tacaacaata gataaaagaa 11880 aagagggtat cacccctctt tcctctttat atgggggtat cttctactca ttttttattt 11940 cgaggtatat gcaccatcga ccacatactg actaccggtc acaaatgaag catcatcaga 12000 aagtaggaag gcaacaacct gagcaacttc ttccggctgt cccaaacgac caatcggatg 12060 tagttttacc atttctgctt cttcaaattc tgcaatcaaa ggcgttttga tatagccagg 12120 atgtactgaa ttaatgcgaa tccctttatc tgcatattcc aatgccgccg ctttcgttag 12180 acccgttacg ccatgttttg cagcgacata gcctgaaata ttttgaatcc cgatcaagcc 12240 tgcaatagaa gcggtattga caatcgctcc gccccctgcg gccaagattg caggaacttc 12300 ataatgcatg ctgtagaaaa ccgcattcaa gttcacatca atcacacgac gccatccttc 12360 aatgctcaat tcttcggtgg agttaacttc acccagaatt cccgcattat tgaaggccaa 12420 atgcagtgca ccaaaagtgc tgaccgcaaa ctcgactgca gctttcatgt cttcaggctc 12480 agcagtattg gccttattcg cagccgcttt cccgcctaaa gcgacaattt cgtccacaac 12540 tttctgtgct gcttccaggt taatatctga aaccactaca cttacaccct gttgagccaa 12600 aagcagtgcg gtgcttttac caatacctga accagcgcca gtaattaaag cgactttatt 12660 gttgaattta tttgacataa ttttttccat ttcaaatttt aagcatcaaa gcttgtttca 12720 tattttaaga ttcaagaaac cagatccggt agatgactcg tctgccaagc gacaacccgt 12780 ctgatatcag gcttgcgatt caccctgtag acggttttca ttcctaaatt ctgtatttcc 12840 aagttatata aacaaaagtg ctaatctatg gggaattccc aggatccaaa caaatagaat 12900 gccatgaaag catcttttgc caagcgctgt gctgtatgtt tcctagacaa accaccaacg 12960 ataactgcaa ctttttgaac tccttacaat ttccttattt tctttcccct tcatcgcata 13020 aaaatagttt ttgcattcac aacaaaatca gcatgaatag tttttaaact cactgtacat 13080 attttctata ttgatgacca agctggatat tgaattgcaa aattctatac agcctgttca 13140 acatgatcga tttagaaggc atacagtaaa cgtgactgaa gtccagaaat ttccaagcca 13200 ttttcaacat tcacatcttg tcgccattgt aataatagct gcagattcgg cttgatattg 13260 gtagaagcag aaacgacaaa ggtatctttt ctatcactgc cacgttcagt gacaccattc 13320 accttttctt taccgccatc ggtatgtctc caggtgacag ccaaattgga tttatcggtc 13380 actttataga gtgcggagaa atctgtctgg aaaaaaacct ctttctcaat gttggtatat 13440 ttttgctcgc tataaagttc aaactgcccc accccctcaa gcgcaaattt atcagttaaa 13500 gcatggtaat aaccggcctg aacattatat tgatagcgat cattactgat ggcaaaaccc 13560 ttcgtttcat tactgccggt aggtacggtc aaaaaaccac cgaaaccaaa atagcgccct 13620 ttttcagcat catgcaatgg ccaggcgata ccacccacaa ttaaatcacc gacacccgag 13680 atatcatcag cgccattcat cttttgcttg gcaaaaggca agaggaattg aggatctaca 13740 atccaatccc ctacttcaat aaaacgaacg taacgcaata ttcccaaatc aatgcttaaa 13800 tcgagatcat cagcgacttt atcaccattt gcatacgcct tatccgcttc cgtatgctgg 13860 taataggcaa ccgctaagtt ggttccccct ggaagtgctt gataatcccc ggcatcagaa 13920 ctcacccctg cggcttgcag gtccaaagcg gcagttaaag caaagaccaa agcagctatt 13980 ttttgatttg aacgatgata gaaatagttt ttcatttgtt tcatttttaa ctctccgttg 14040 ttttgactca tttttttaaa atgagtcttc ctagcacaaa gaccactcag gtctttgcgc 14100 aatttcttga ttttgatttg ggtattaaat atggaaaaac gttgggtgat cagttttcgt 14160 gcataagcac aatacgcccg atgacgttgc catctttcaa gtctccaaat gcggaattga 14220 tctgcgaaat tggcagtttt ttcacgggaa tggctgacat gtgggtttct ttcaccagct 14280 ccaccagctc tcttaattcc tctaccgtcc ctacataact gccctggatt gtgagtggtc 14340 tcattggaat caccggaatg gaaagcttaa tttctccccc catcaatccg cagatcacaa 14400 tatgcccacc acgtgcagca ctcgccaagg caaggctcaa tgttggatta ctgccaacca 14460 gatcaaggat cagacgtgca ccaccgtcag ttgcctgaat cagctgttga gcagcatcct 14520 cacttcggct attgatgacc gataatgcac cggcagcacg tgctgcttcc agtttgctgt 14580 catcaatatc aactacgatt gcgcctttgg cttgcatagc tttgagcaac tcgagtgcca 14640 tcagccctaa accaccggca ccaatgatca ccaccggctc gctttgaatc aaatcaccga 14700 attttttcag tgcactgtat gttgtcacgc ctgcacatgc caaaggtgca gcttcagcca 14760 gatccagacc tgcaatatcc accagatatc gtggatgcgg cacgatgata tattcggcaa 14820 aaccacccgg cttggcgatg cctaactgtt gcggtttggc acacaggttt tcttcgccac 14880 gtttacagta gttgcattca ccgcaaccaa tccatggatg aaccaagctg accatgccga 14940 ccttgactga ttccgcatct ggaccgacag caaccacctg acctgtaatt tcatgactta 15000 aggttaaggg tggcttcagc ccacgatctg caagggataa acgcttgccc ccacctagat 15060 cataataacc ttcccataag tgtaaatccg tatggcatag acctgcggct tttacatgga 15120 gtaaaacttc agtacctttc ggttgcggaa tttctttctc aacgtcttcg agtggttgtc 15180 catgatgcgt cacgcagtaa cagtgcatga atctctcctt tgaaacaata aaatagacgg 15240 ccttgtagtg aacaaagtct tttattcact aagttttata cgccgtgtgg gcactgattt 15300 atgctttaaa ccactgcgca attttcgcta attcttgatc agcttcactt gcacgcccag 15360 ctaggaaagg aaaaacgtgc tgcatgttgt ccaccacaga taaagtcaca tcaacaccct 15420 ctttttttgc aatatcagca agacgtgttg cattgtctac aagtgattca actgatccgg 15480 cattgatata caaacgtggg aaaacctgat aattggcttt taacggattc gccaatggat 15540 ttgccggatc accatgttca cccaagaaca tttgtgacat gcctttaagc agatccactg 15600 taatcaaggc atcagtggca tcgttgctga tcagggtttc acctttgtgc tccatatcca 15660 gccaaggaga gaatgcaatc actgctcctg gcaactcaat cccttcattt cgtagattga 15720 gtacggttga tatcgccaga ttcccccccg cagaatcccc tgcggtcagc atattttttg 15780 cagtaaagcc acgctggagt agttctttat atactgctgt cacgtcctga atttgtgccg 15840 ggaagacatg ttctggtgaa cgtcggtaat caaccacaaa tgcggatacc cctaaatact 15900 tggccaaatg ccccaccagc ttacggtgac tggccgaaga accgaccgca aatccaccgc 15960 catgggtata aatgatgact ttggataagt cagcatcttt cggataaatc caaagacctt 16020 ctacacctgc cacaacatcg aatttataag acacttcttc cggttccaat gtaggttgat 16080 gccattcatc aaacatactg cgaaagtctt caatggtcat attcggattt tcctgcatcc 16140 gtcttgacca gttcgcatat aaatcgaaaa gaaattgagt attgctttgt gtgctattca 16200 ttttaaaatc cttgatttga tatttaagga ataaatccta gttttattcc atgaagatat 16260 aaaaacttga gtgccatcac tcatggctag acactcagaa gatccaaatc taaagagtgg 16320 ctttgcatca ctggtttgat acaatttttt gcatgactaa gtaatctacg gataatctaa 16380 ccgtttcaaa ttagtatttt aaaatgtaaa aaatacatac cagcgaatgt tttctgcaaa 16440 atcgcatcct gttcaatata gcttttgatc ctacttattc tcttttctat tccagtccgt 16500 tataaaaaag ctttcattca ttttcatgca atcatgagct atgaatgttc ttaaacatta 16560 aacgattgtg tgtatggctg acttgtacat tcttgtactt atttttgtat aaaatgatca 16620 ggctcatcaa tttatgggaa aaattacaat tcgggtacaa tatctttcct gtttcatgaa 16680 tctattcaac tcattaaact tacgaccctc aactgcccaa aatcatagga tctgccgatc 16740 cacttgcaga attagcaatg ctaaaacatg aactccaaag agttactaaa aaaagagcat 16800 attaaaaaaa agccgtggca tatttcgcaa gccagttcaa gtcaggtatg tctttattca 16860 gtacctcagt taaactttag attttcataa cgatggttat tctgcatggc taaatacgct 16920 aatcagcaaa aaactctcca aaagataggc acagaaacac atatcaacca taaaaaccat 16980 ctcagacagt atatttacaa gcctctaatt caccgcactc acacttctct gcaagccttt 17040 ttaaataccc tgtacaaagt tctcagcctg atgaagcttc accttggact tagctttcag 17100 ttcagcctgt acttggtcag tttctgaatt ttcatttgca taaaactcct ccaccacatc 17160 cataccctcc tcaatgtcag tttcaaaatg tgcattgtca tagccttgcc gtgccatttg 17220 aatggcttat tgaagattaa tggcatcacg taaagttaaa tccacgtaat acacaggtgt 17280 tcgatagctt tgcgtcgtag actttctcga agagtcaatt gcagcggtag gcatgacagc 17340 aagccattca atgccgcatg gtaataactc agccgtgcgg ccaacgttcg tatgctgtta 17400 aaacccggtt attctaa 17417 28 19 DNA Artificial Sequence Description of Artificial SequencePRIMER 28 gagtttgatc ctggctcag 19 29 16 DNA Artificial Sequence Description of Artificial SequencePRIMER 29 taccttgtta cgactt 16 30 17 DNA Artificial Sequence Description of Artificial SequencePRIMER 30 gtgccagcag ymgcggt 17 31 34 DNA Artificial Sequence Description of Artificial SequencePRIMER 31 gagtctgagc atatgtcaca aaaaatggat tttg 34 32 39 DNA Artificial Sequence Description of Artificial SequencePRIMER 32 gagtctgagg gatccttagg cattggcagg ttgcttgat 39 

What is claimed is:
 1. An isolated nucleic acid fragment encoding adipic acid synthesizing enzymes selected from the group consisting of: (a) an isolated nucleic acid molecule as set forth in SEQ ID NO:27; (b) an isolated nucleic acid molecule that hybridizes with (a) under the following hybridization conditions: 0.1×SSC, 0.1% SDS at 65° C.; and washed with 2×SSC, 0.1% SDS followed by 0.1×SSC, 0.1% SDS; or an isolated nucleic acid molecule that is completely complementary to (a) or (b); wherein the isolated nucleic acid molecule of parts (a) or (b) comprises open reading frames encoding each of the enzymes selected from the group consisting of: a cyclohexanone monooxygenase, a 6-aldehyde hexanoic dehydrogenase, a cyclohexanol dehydrogenase, a 6-hydroxy hexanoic acid dehydrogenase and a caprolactone hydrolase. 